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INDEXED
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MeasurementSet
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IGVFDS5177YHMM
IGVFDS5177YHMM
released
Json view
File Set Type
experimental data
Summary
single-cell RNA sequencing assay (SHARE-seq)
Assay Term
single-cell RNA sequencing assay
Sample Summaries
Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 436)
Protocols
https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw
Aliases
buenrostro-bernstein:scRNA Lib 599
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
4 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI4067FRSX
fastq
reads
R2
3832
Read 2, Barcode index
IGVFFI6799PEMC
Illumina NovaSeq 6000
H22KKDRX5
1.2 GB
Jason Buenrostro, Broad
validated
IGVFFI4139IHFB
fastq
reads
R2
3808
Read 2, Barcode index
IGVFFI9471PHWP
Illumina NovaSeq 6000
H22KKDRX5
1.2 GB
Jason Buenrostro, Broad
validated
IGVFFI6997HAKK
fastq
reads
R1
3808
Read 1
IGVFFI9471PHWP
Illumina NovaSeq 6000
H22KKDRX5
728 MB
Jason Buenrostro, Broad
validated
IGVFFI8547WDDR
fastq
reads
R1
3832
Read 1
IGVFFI6799PEMC
Illumina NovaSeq 6000
H22KKDRX5
738 MB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM4321WQTD
Tissue
brain
Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 436)
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO9446AKYF
buenrostro-bernstein:Donor 2047
unspecified
Mus musculus
Related Multiome Datasets
4 items
Accession
Type
Summary
Aliases
Lab
IGVFDS4752BWME
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:scRNA Lib 611
Jason Buenrostro, Broad
IGVFDS5083GBBF
MeasurementSet
single-cell ATAC-seq (SHARE-seq)
buenrostro-bernstein:scATAC Lib 1270
Jason Buenrostro, Broad
IGVFDS6289YQBN
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:scRNA Lib 601
Jason Buenrostro, Broad
IGVFDS7571FXYP
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:scRNA Lib 600
Jason Buenrostro, Broad