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IGVFDS5103JQSX

released
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples
Protocols
Aliases
ansuman-satpathy:snATAC-seq_igvf12_10x4
Attribution
Ansuman Satpathy, Stanford

Sequencing Results (Illumina)

28 items
Read Names
fastq
reads
R1
1
Read 1
225JTGLT3
4
5.3 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R1
1
Read 1
225JCCLT3
6
5.3 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
225JTGLT3
4
1.2 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
Barcode index
225JTGLT3
7
2.9 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
225JTGLT3
3
1.2 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
Barcode index
225JCCLT3
7
3.0 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R1
1
Read 1
225JTGLT3
5
5.3 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R3
1
Read 2
225JTGLT3
7
5.4 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
225JCCLT3
7
1.2 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
Barcode index
225JCCLT3
6
2.9 GB
Ansuman Satpathy, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples

Donors

3 items
Aliases
  • ansuman-satpathy:singh_bcell_donor_2
female
Homo sapiens
  • ansuman-satpathy:bridge_bone_marrow_donor_2038
male
Homo sapiens
  • ansuman-satpathy:singh_bcell_donor_1
male
Homo sapiens

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq): cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
  • ansuman-satpathy:igvf12_analysis_set_10x4
Ansuman Satpathy, Stanford

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
  • ansuman-satpathy:snRNA-seq_igvf12_10x4
Ansuman Satpathy, Stanford

Auxiliary Datasets

1 item
Accession
Type
Summary
Files
Aliases
Lab
AuxiliarySet
lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)
  • ansuman-satpathy:multiseq_igvf12_10x4
Ansuman Satpathy, Stanford