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INDEXED
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MeasurementSet
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IGVFDS5083GBBF
IGVFDS5083GBBF
released
Json view
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 436)
Protocols
https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw
Aliases
buenrostro-bernstein:scATAC Lib 1270
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
10 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0312VUCN
fastq
reads
R1
5373
Read 1
IGVFFI2800VZKP
Illumina NovaSeq 6000
22KHF5LT3
6.0 GB
Jason Buenrostro, Broad
validated
IGVFFI0877MCVK
fastq
reads
R2
7331
Read 2, Barcode index
IGVFFI0240SVTR
Illumina NovaSeq 6000
22KFF5LT3
10 GB
Jason Buenrostro, Broad
validated
IGVFFI1173DRYT
fastq
reads
R2
7336
Read 2, Barcode index
IGVFFI3248DTTM
Illumina NovaSeq 6000
22KFF5LT3
10 GB
Jason Buenrostro, Broad
validated
IGVFFI3204NMTN
fastq
reads
R2
5373
Read 2, Barcode index
IGVFFI2800VZKP
Illumina NovaSeq 6000
22KHF5LT3
8.7 GB
Jason Buenrostro, Broad
validated
IGVFFI4034UCLF
fastq
reads
R1
7336
Read 1
IGVFFI3248DTTM
Illumina NovaSeq 6000
22KFF5LT3
6.9 GB
Jason Buenrostro, Broad
validated
IGVFFI6238XUIY
fastq
reads
R1
5368
Read 1
IGVFFI9596GYXI
Illumina NovaSeq 6000
22KHF5LT3
5.9 GB
Jason Buenrostro, Broad
validated
IGVFFI6465SWTP
fastq
reads
R1
5363
Read 1
IGVFFI4488MOJS
Illumina NovaSeq 6000
22KHF5LT3
5.9 GB
Jason Buenrostro, Broad
validated
IGVFFI7345VKMC
fastq
reads
R2
5368
Read 2, Barcode index
IGVFFI9596GYXI
Illumina NovaSeq 6000
22KHF5LT3
8.6 GB
Jason Buenrostro, Broad
validated
IGVFFI9080RCHI
fastq
reads
R2
5363
Read 2, Barcode index
IGVFFI4488MOJS
Illumina NovaSeq 6000
22KHF5LT3
8.6 GB
Jason Buenrostro, Broad
validated
IGVFFI9543FOFD
fastq
reads
R1
7331
Read 1
IGVFFI0240SVTR
Illumina NovaSeq 6000
22KFF5LT3
6.9 GB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM4321WQTD
Tissue
brain
Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 436)
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO9446AKYF
buenrostro-bernstein:Donor 2047
unspecified
Mus musculus
Related Multiome Datasets
4 items
Accession
Type
Summary
Aliases
Lab
IGVFDS4752BWME
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:scRNA Lib 611
Jason Buenrostro, Broad
IGVFDS5177YHMM
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:scRNA Lib 599
Jason Buenrostro, Broad
IGVFDS6289YQBN
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:scRNA Lib 601
Jason Buenrostro, Broad
IGVFDS7571FXYP
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:scRNA Lib 600
Jason Buenrostro, Broad