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IGVFDS5076YZXC

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File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
  • multiplexed sample: Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 83 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples
Protocols
Aliases
igvf:corces_measurementSet_X013_G4_RNA
Attribution
Ryan Corces, Gladstone Institute UCSF

Sequencing Results (Illumina)

4 items
Read Names
fastq
reads
R2
1
Read 2
HJ7TNDSX5
4
8.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
HJ7TNDSX5
4
1.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I2
1
HJ7TNDSX5
4
1.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
HJ7TNDSX5
4
3.6 GB
Ryan Corces, Gladstone Institute UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 83 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples

Donors

12 items
Aliases
  • igvf:corces_donor_BANN0560
male
Homo sapiens
  • igvf:corces_donor_BANN0417
male
Homo sapiens
  • igvf:corces_donor_BANN1560
male
Homo sapiens
  • igvf:corces_donor_BANN2038
male
Homo sapiens
  • igvf:corces_donor_BANN1317
male
Homo sapiens
  • igvf:corces_donor_BANN1719
female
Homo sapiens
  • igvf:corces_donor_BANN1865
male
Homo sapiens
  • igvf:corces_donor_BANN2057
male
Homo sapiens
  • igvf:corces_donor_BANN1957
male
Homo sapiens
  • igvf:corces_donor_BANN1039
male
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
  • igvf:corces_measurementSet_X013_G4_ATAC
Ryan Corces, Gladstone Institute UCSF