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IGVFDS5055FBCY

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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (female, 24.0 years) peripheral blood mononuclear cell; Homo sapiens (male, 52.0 years) peripheral blood mononuclear cell; ... and 18 more samples
Protocols
Aliases
jimmie-ye:XX14-SC3_snATAC
Attribution
Jimmie Ye, UCSF

Sequencing Results (Illumina)

16 items
Read Names
fastq
reads
I1
190
2.1 GB
Jimmie Ye, UCSF
validated
fastq
reads
R3
190
Read 2
15 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
190
Barcode index
5.3 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
192
Barcode index
5.3 GB
Jimmie Ye, UCSF
validated
fastq
reads
R3
193
Read 2
15 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
191
Barcode index
5.3 GB
Jimmie Ye, UCSF
validated
fastq
reads
R3
192
Read 2
15 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
190
Read 1
9.5 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
193
Barcode index
5.2 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
191
2.1 GB
Jimmie Ye, UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female, 24.0 years) peripheral blood mononuclear cell; Homo sapiens (male, 52.0 years) peripheral blood mononuclear cell; ... and 18 more samples

Donors

20 items
Aliases
  • jimmie-ye:donor_196
female
Homo sapiens
  • jimmie-ye:donor_241
male
Homo sapiens
  • jimmie-ye:donor_276
male
Homo sapiens
  • jimmie-ye:donor_225
female
Homo sapiens
  • jimmie-ye:donor_259
female
Homo sapiens
  • jimmie-ye:donor_251
male
Homo sapiens
  • jimmie-ye:donor_67
female
Homo sapiens
  • jimmie-ye:donor_255
male
Homo sapiens
  • jimmie-ye:donor_249
female
Homo sapiens
  • jimmie-ye:donor_237
female
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
  • jimmie-ye:XX14-SC3_snRNA
Jimmie Ye, UCSF