{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS5032LSER/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS5032LSER",
"aliases": [
"bradley-bernstein:scRNA Lib 24",
"buenrostro-bernstein:scRNA Lib 24"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002631/",
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM6786RHZK](/primary-cells/IGVFSM6786RHZK/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM6786RHZK/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS5032LSER](/measurement-sets/IGVFDS5032LSER/) has sequence file(s): [IGVFFI8462QRNT](/sequence-files/IGVFFI8462QRNT/), [IGVFFI1329YUMV](/sequence-files/IGVFFI1329YUMV/), [IGVFFI1079PNFI](/sequence-files/IGVFFI1079PNFI/), [IGVFFI2822ZNXP](/sequence-files/IGVFFI2822ZNXP/), [IGVFFI6571NHUI](/sequence-files/IGVFFI6571NHUI/), [IGVFFI8538IHWP](/sequence-files/IGVFFI8538IHWP/), [IGVFFI6693ZBQE](/sequence-files/IGVFFI6693ZBQE/), [IGVFFI0230VRMR](/sequence-files/IGVFFI0230VRMR/), [IGVFFI6274GJBF](/sequence-files/IGVFFI6274GJBF/), [IGVFFI8953XBXW](/sequence-files/IGVFFI8953XBXW/), [IGVFFI9573BKGX](/sequence-files/IGVFFI9573BKGX/), [IGVFFI9993ZRLY](/sequence-files/IGVFFI9993ZRLY/), [IGVFFI8519SLLI](/sequence-files/IGVFFI8519SLLI/), [IGVFFI9444MPMT](/sequence-files/IGVFFI9444MPMT/), [IGVFFI2062KQOR](/sequence-files/IGVFFI2062KQOR/), [IGVFFI8512YBRF](/sequence-files/IGVFFI8512YBRF/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS5032LSER/"
}
],
"WARNING": [
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS5032LSER](/measurement-sets/IGVFDS5032LSER/) has an `assay_term` of single-cell RNA sequencing assay but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS5032LSER/"
}
]
},
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"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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],
"accession": "IGVFSM6786RHZK",
"aliases": [
"bradley-bernstein:BioSam 4568_SS-PKR 4",
"buenrostro-bernstein:BioSam 4568_SS-PKR 4"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 4), male, Homo sapiens (37 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:47:16.459828+00:00",
"summary": "single-cell RNA sequencing assay (SHARE-seq)",
"uuid": "952b2630-6955-46a4-b4a5-72f910f7238e"
}