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IGVFDS5014TCXP

released
GRU
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
  • Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to endodermal cell for 2 days (cellular sub pool: SS-PKR 181)
Protocols
Aliases
buenrostro-bernstein:scATAC Lib 451
Attribution
Jason Buenrostro, Broad

Sequencing Results (Illumina)

21 items
Read Names
fastq
reads
R1
4069
Read 1
22523KLT3
2.5 GB
Jason Buenrostro, Broad
validated
fastq
reads
R2
1065
Read 2
22773CLT3
1.6 GB
Jason Buenrostro, Broad
validated
fastq
reads
I1
4069
Barcode index
22523KLT3
1.0 GB
Jason Buenrostro, Broad
validated
fastq
reads
R1
981
Read 1
22773CLT3
3.4 GB
Jason Buenrostro, Broad
validated
fastq
reads
R2
3997
Read 2
22523KLT3
1.2 GB
Jason Buenrostro, Broad
validated
fastq
reads
R2
981
Read 2
22773CLT3
1.6 GB
Jason Buenrostro, Broad
validated
fastq
reads
R1
1065
Read 1
22773CLT3
3.3 GB
Jason Buenrostro, Broad
validated
fastq
reads
R1
939
Read 1
22773CLT3
3.4 GB
Jason Buenrostro, Broad
validated
fastq
reads
R1
1023
Read 1
22773CLT3
3.4 GB
Jason Buenrostro, Broad
validated
fastq
reads
R1
4033
Read 1
22523KLT3
2.5 GB
Jason Buenrostro, Broad
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to endodermal cell for 2 days (cellular sub pool: SS-PKR 181)

Donors

100 items
Aliases
  • buenrostro-bernstein:Donor 1860
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1850
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1816
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1862
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1834
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1876
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1828
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1892
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1745
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1867
unspecified
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
  • buenrostro-bernstein:scRNA Lib 436
Jason Buenrostro, Broad