{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS4993AQUF/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS4993AQUF",
"aliases": [
"ali-mortazavi:009_67E_illumina"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003109/",
"assay_slims": [
"gene expression"
],
"status": "released",
"term_name": "single-nucleus RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "Measurement set [IGVFDS4993AQUF](/measurement-sets/IGVFDS4993AQUF/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/measurement-sets/IGVFDS4993AQUF/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS4993AQUF](/measurement-sets/IGVFDS4993AQUF/) has in progress subobject tabular file [IGVFFI2591OFQO](/tabular-files/IGVFFI2591OFQO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS4993AQUF/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS4993AQUF](/measurement-sets/IGVFDS4993AQUF/) has in progress subobject tabular file [IGVFFI1138MCVX](/tabular-files/IGVFFI1138MCVX/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS4993AQUF/"
},
{
"category": "mismatched status",
"detail": "Released multiplexed sample [IGVFSM4177UWKS](/multiplexed-samples/IGVFSM4177UWKS/) has in progress subobject tabular file [IGVFFI9994MHCA](/tabular-files/IGVFFI9994MHCA/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/IGVFSM4177UWKS/"
},
{
"category": "missing publication",
"detail": "Multiplexed sample [IGVFSM4177UWKS](/multiplexed-samples/IGVFSM4177UWKS/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/multiplexed-samples/IGVFSM4177UWKS/"
}
]
},
"award": {
"@id": "/awards/HG012077/",
"component": "mapping",
"contact_pi": {
"@id": "/users/2c33e192-e815-4384-a220-72a0992cbe24/",
"title": "Ali Mortazavi"
},
"title": "Center for Mouse Genomic Variation at Single Cell Resolution"
},
"control_for": [],
"creation_timestamp": "2023-10-12T16:21:13.878894+00:00",
"data_use_limitation_summaries": [
"no certificate"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO5502NJPS/",
"accession": "IGVFDO5502NJPS",
"aliases": [
"ali-mortazavi:038_129S1J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0681EHNP/",
"accession": "IGVFDO0681EHNP",
"aliases": [
"ali-mortazavi:052_NZOJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0751WQHI/",
"accession": "IGVFDO0751WQHI",
"aliases": [
"ali-mortazavi:080_PWKJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2319OUEC/",
"accession": "IGVFDO2319OUEC",
"aliases": [
"ali-mortazavi:045_129S1J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5539RLXJ/",
"accession": "IGVFDO5539RLXJ",
"aliases": [
"ali-mortazavi:029_AJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3603MEIO/",
"accession": "IGVFDO3603MEIO",
"aliases": [
"ali-mortazavi:084_PWKJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7007WBAX/",
"accession": "IGVFDO7007WBAX",
"aliases": [
"ali-mortazavi:016_B6J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7610XXRR/",
"accession": "IGVFDO7610XXRR",
"aliases": [
"ali-mortazavi:072_NODJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9202WGJZ/",
"accession": "IGVFDO9202WGJZ",
"aliases": [
"ali-mortazavi:085_PWKJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO1643VEDI/",
"accession": "IGVFDO1643VEDI",
"aliases": [
"ali-mortazavi:019_B6J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6066JIEJ/",
"accession": "IGVFDO6066JIEJ",
"aliases": [
"ali-mortazavi:043_129S1J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6141KSSQ/",
"accession": "IGVFDO6141KSSQ",
"aliases": [
"ali-mortazavi:024_B6J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3534MDFF/",
"accession": "IGVFDO3534MDFF",
"aliases": [
"ali-mortazavi:046_NZOJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5177QEWF/",
"accession": "IGVFDO5177QEWF",
"aliases": [
"ali-mortazavi:063_WSBJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3436ZMLY/",
"accession": "IGVFDO3436ZMLY",
"aliases": [
"ali-mortazavi:091_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9374WXKK/",
"accession": "IGVFDO9374WXKK",
"aliases": [
"ali-mortazavi:028_AJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5258MBVH/",
"accession": "IGVFDO5258MBVH",
"aliases": [
"ali-mortazavi:040_129S1J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9890MXGN/",
"accession": "IGVFDO9890MXGN",
"aliases": [
"ali-mortazavi:068_NODJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5737FRWD/",
"accession": "IGVFDO5737FRWD",
"aliases": [
"ali-mortazavi:081_PWKJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5183UZGS/",
"accession": "IGVFDO5183UZGS",
"aliases": [
"ali-mortazavi:021_B6J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6607QZPA/",
"accession": "IGVFDO6607QZPA",
"aliases": [
"ali-mortazavi:050_NZOJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO1452VDIT/",
"accession": "IGVFDO1452VDIT",
"aliases": [
"ali-mortazavi:035_AJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3640WUBU/",
"accession": "IGVFDO3640WUBU",
"aliases": [
"ali-mortazavi:066_NODJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9510ILZG/",
"accession": "IGVFDO9510ILZG",
"aliases": [
"ali-mortazavi:053_NZOJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3762EAWT/",
"accession": "IGVFDO3762EAWT",
"aliases": [
"ali-mortazavi:076_PWKJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO8904OIIT/",
"accession": "IGVFDO8904OIIT",
"aliases": [
"ali-mortazavi:044_129S1J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO1477BPVO/",
"accession": "IGVFDO1477BPVO",
"aliases": [
"ali-mortazavi:088_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6112GRYR/",
"accession": "IGVFDO6112GRYR",
"aliases": [
"ali-mortazavi:059_WSBJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6219LVKW/",
"accession": "IGVFDO6219LVKW",
"aliases": [
"ali-mortazavi:032_AJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9560CEGZ/",
"accession": "IGVFDO9560CEGZ",
"aliases": [
"ali-mortazavi:061_WSBJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6614NNPY/",
"accession": "IGVFDO6614NNPY",
"aliases": [
"ali-mortazavi:089_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2753JGYS/",
"accession": "IGVFDO2753JGYS",
"aliases": [
"ali-mortazavi:095_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5085MJSP/",
"accession": "IGVFDO5085MJSP",
"aliases": [
"ali-mortazavi:048_NZOJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7951JDSP/",
"accession": "IGVFDO7951JDSP",
"aliases": [
"ali-mortazavi:026_AJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2831PZHE/",
"accession": "IGVFDO2831PZHE",
"aliases": [
"ali-mortazavi:077_PWKJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0813DZTW/",
"accession": "IGVFDO0813DZTW",
"aliases": [
"ali-mortazavi:069_NODJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO4707SGWM/",
"accession": "IGVFDO4707SGWM",
"aliases": [
"ali-mortazavi:051_NZOJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7254QNQZ/",
"accession": "IGVFDO7254QNQZ",
"aliases": [
"ali-mortazavi:031_AJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0026YRCR/",
"accession": "IGVFDO0026YRCR",
"aliases": [
"ali-mortazavi:018_B6J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO8152XDDC/",
"accession": "IGVFDO8152XDDC",
"aliases": [
"ali-mortazavi:090_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5872DFML/",
"accession": "IGVFDO5872DFML",
"aliases": [
"ali-mortazavi:094_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3655FKMR/",
"accession": "IGVFDO3655FKMR",
"aliases": [
"ali-mortazavi:025_B6J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5523UFUN/",
"accession": "IGVFDO5523UFUN",
"aliases": [
"ali-mortazavi:070_NODJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO4788BIQB/",
"accession": "IGVFDO4788BIQB",
"aliases": [
"ali-mortazavi:020_B6J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7255VZBN/",
"accession": "IGVFDO7255VZBN",
"aliases": [
"ali-mortazavi:062_WSBJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO8322VYDU/",
"accession": "IGVFDO8322VYDU",
"aliases": [
"ali-mortazavi:093_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2292YGGE/",
"accession": "IGVFDO2292YGGE",
"aliases": [
"ali-mortazavi:049_NZOJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO4725SNCJ/",
"accession": "IGVFDO4725SNCJ",
"aliases": [
"ali-mortazavi:017_B6J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0430HQIU/",
"accession": "IGVFDO0430HQIU",
"aliases": [
"ali-mortazavi:041_129S1J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO1744FDIX/",
"accession": "IGVFDO1744FDIX",
"aliases": [
"ali-mortazavi:036_129S1J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0624KKTV/",
"accession": "IGVFDO0624KKTV",
"aliases": [
"ali-mortazavi:030_AJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO8958JQIY/",
"accession": "IGVFDO8958JQIY",
"aliases": [
"ali-mortazavi:047_NZOJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2645GUSC/",
"accession": "IGVFDO2645GUSC",
"aliases": [
"ali-mortazavi:060_WSBJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9142EUBJ/",
"accession": "IGVFDO9142EUBJ",
"aliases": [
"ali-mortazavi:096_WSBJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO4469VYEZ/",
"accession": "IGVFDO4469VYEZ",
"aliases": [
"ali-mortazavi:073_NODJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7062NBTQ/",
"accession": "IGVFDO7062NBTQ",
"aliases": [
"ali-mortazavi:079_PWKJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2301HIUQ/",
"accession": "IGVFDO2301HIUQ",
"aliases": [
"ali-mortazavi:067_NODJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3207TERA/",
"accession": "IGVFDO3207TERA",
"aliases": [
"ali-mortazavi:086_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3662UKFW/",
"accession": "IGVFDO3662UKFW",
"aliases": [
"ali-mortazavi:087_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0853BCOL/",
"accession": "IGVFDO0853BCOL",
"aliases": [
"ali-mortazavi:058_WSBJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2106EEWB/",
"accession": "IGVFDO2106EEWB",
"aliases": [
"ali-mortazavi:078_PWKJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9340WGNV/",
"accession": "IGVFDO9340WGNV",
"aliases": [
"ali-mortazavi:037_129S1J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9199TPBC/",
"accession": "IGVFDO9199TPBC",
"aliases": [
"ali-mortazavi:071_NODJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0696DMIA/",
"accession": "IGVFDO0696DMIA",
"aliases": [
"ali-mortazavi:057_WSBJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7957DMLJ/",
"accession": "IGVFDO7957DMLJ",
"aliases": [
"ali-mortazavi:033_AJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI5233HZHI/",
"accession": "IGVFFI5233HZHI",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T22:45:17.176437+00:00",
"file_format": "fastq",
"file_size": 14112852441,
"href": "/sequence-files/IGVFFI5233HZHI/@@download/IGVFFI5233HZHI.fastq.gz",
"md5sum": "1a386fe8cf6a308cfd58bd03440d21e7",
"s3_uri": "s3://igvf-files/2023/10/12/e23950c4-3707-47be-ad7d-dc633703f73c/IGVFFI5233HZHI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova1/igvf_009_B06_D_nova_N1_L001_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4660WBBI/",
"accession": "IGVFFI4660WBBI",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T23:25:39.899583+00:00",
"file_format": "fastq",
"file_size": 7623801849,
"href": "/sequence-files/IGVFFI4660WBBI/@@download/IGVFFI4660WBBI.fastq.gz",
"md5sum": "18ed39549ccf85744a9d284685407aa0",
"s3_uri": "s3://igvf-files/2023/10/12/78531c7e-9946-4380-b3c8-154e4c1a09a2/IGVFFI4660WBBI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova1/igvf_009_B06_D_nova_N1_L004_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0776VZHW/",
"accession": "IGVFFI0776VZHW",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T23:51:06.615828+00:00",
"file_format": "fastq",
"file_size": 13689271238,
"href": "/sequence-files/IGVFFI0776VZHW/@@download/IGVFFI0776VZHW.fastq.gz",
"md5sum": "3c2681b68f283c2f0203fc4e1549379f",
"s3_uri": "s3://igvf-files/2023/10/12/d709a7bb-217c-4cf7-b5f5-263617f0cb0b/IGVFFI0776VZHW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova2/igvf_009_B06_D_nova_N2_L003_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7836EYIQ/",
"accession": "IGVFFI7836EYIQ",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T23:47:06.579971+00:00",
"file_format": "fastq",
"file_size": 7643550466,
"href": "/sequence-files/IGVFFI7836EYIQ/@@download/IGVFFI7836EYIQ.fastq.gz",
"md5sum": "6da00c216a7299f88cff2996782aaeaf",
"s3_uri": "s3://igvf-files/2023/10/12/b6315001-9961-402b-8304-3174010cc32f/IGVFFI7836EYIQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova2/igvf_009_B06_D_nova_N2_L002_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6802VBFE/",
"accession": "IGVFFI6802VBFE",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T23:02:55.182815+00:00",
"file_format": "fastq",
"file_size": 7819744937,
"href": "/sequence-files/IGVFFI6802VBFE/@@download/IGVFFI6802VBFE.fastq.gz",
"md5sum": "73a822e79ecbc1c84516e0447a2adc9e",
"s3_uri": "s3://igvf-files/2023/10/12/41b4db0f-7ba6-4d1e-b597-c0ac03b4ce11/IGVFFI6802VBFE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova1/igvf_009_B06_D_nova_N1_L002_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2446LQYD/",
"accession": "IGVFFI2446LQYD",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T23:40:10.501828+00:00",
"file_format": "fastq",
"file_size": 13830396497,
"href": "/sequence-files/IGVFFI2446LQYD/@@download/IGVFFI2446LQYD.fastq.gz",
"md5sum": "461482c6eba05c7295d664e76ff95eb4",
"s3_uri": "s3://igvf-files/2023/10/12/2c15b770-4d73-47d0-a337-9b531092b38f/IGVFFI2446LQYD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova2/igvf_009_B06_D_nova_N2_L002_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4909HGIZ/",
"accession": "IGVFFI4909HGIZ",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T23:58:10.981216+00:00",
"file_format": "fastq",
"file_size": 7580187639,
"href": "/sequence-files/IGVFFI4909HGIZ/@@download/IGVFFI4909HGIZ.fastq.gz",
"md5sum": "880be43979c3b9650543eeb32d01dc92",
"s3_uri": "s3://igvf-files/2023/10/12/f8dc526d-4176-4d75-af63-a2a5932c1333/IGVFFI4909HGIZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova2/igvf_009_B06_D_nova_N2_L003_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0546IEMJ/",
"accession": "IGVFFI0546IEMJ",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T23:29:36.468475+00:00",
"file_format": "fastq",
"file_size": 13473519497,
"href": "/sequence-files/IGVFFI0546IEMJ/@@download/IGVFFI0546IEMJ.fastq.gz",
"md5sum": "96f36840d0ef6a0bdba225ce751020b7",
"s3_uri": "s3://igvf-files/2023/10/12/62479cae-23a3-4436-ab80-c722195bc265/IGVFFI0546IEMJ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova2/igvf_009_B06_D_nova_N2_L001_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6586LVNY/",
"accession": "IGVFFI6586LVNY",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-13T00:08:41.701466+00:00",
"file_format": "fastq",
"file_size": 7577430363,
"href": "/sequence-files/IGVFFI6586LVNY/@@download/IGVFFI6586LVNY.fastq.gz",
"md5sum": "101a2f42c5edaa7a8f072decb0f63d13",
"s3_uri": "s3://igvf-files/2023/10/13/270f84c1-5029-4801-99b1-b6de86e8cee5/IGVFFI6586LVNY.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova2/igvf_009_B06_D_nova_N2_L004_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8523ILLW/",
"accession": "IGVFFI8523ILLW",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T22:55:58.538496+00:00",
"file_format": "fastq",
"file_size": 14322480302,
"href": "/sequence-files/IGVFFI8523ILLW/@@download/IGVFFI8523ILLW.fastq.gz",
"md5sum": "6e923a5c20079c5921b29cbb04a8296b",
"s3_uri": "s3://igvf-files/2023/10/12/42f2c4e4-b0cf-426b-a33b-709043572626/IGVFFI8523ILLW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova1/igvf_009_B06_D_nova_N1_L002_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6161WAFP/",
"accession": "IGVFFI6161WAFP",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T23:14:10.274260+00:00",
"file_format": "fastq",
"file_size": 7802822299,
"href": "/sequence-files/IGVFFI6161WAFP/@@download/IGVFFI6161WAFP.fastq.gz",
"md5sum": "d804bcd6721f006d8523f57b872775b9",
"s3_uri": "s3://igvf-files/2023/10/12/a799d898-20bd-4f1e-a33d-4efe82d27728/IGVFFI6161WAFP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova1/igvf_009_B06_D_nova_N1_L003_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9131LLYX/",
"accession": "IGVFFI9131LLYX",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T23:18:09.487829+00:00",
"file_format": "fastq",
"file_size": 13826825644,
"href": "/sequence-files/IGVFFI9131LLYX/@@download/IGVFFI9131LLYX.fastq.gz",
"md5sum": "e427f6fefe293a989d953b320e03dff7",
"s3_uri": "s3://igvf-files/2023/10/12/0ebaf413-26fc-4695-9e8e-857014eccc6e/IGVFFI9131LLYX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova1/igvf_009_B06_D_nova_N1_L004_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7890TKLE/",
"accession": "IGVFFI7890TKLE",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T23:36:29.017513+00:00",
"file_format": "fastq",
"file_size": 7518495311,
"href": "/sequence-files/IGVFFI7890TKLE/@@download/IGVFFI7890TKLE.fastq.gz",
"md5sum": "cb6fdd2de89218aa572be541dd019f4d",
"s3_uri": "s3://igvf-files/2023/10/12/bef5c01e-0d1d-4cb6-b173-49773822ca30/IGVFFI7890TKLE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova2/igvf_009_B06_D_nova_N2_L001_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8498LWMX/",
"accession": "IGVFFI8498LWMX",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-13T00:01:56.974216+00:00",
"file_format": "fastq",
"file_size": 13680755735,
"href": "/sequence-files/IGVFFI8498LWMX/@@download/IGVFFI8498LWMX.fastq.gz",
"md5sum": "82a94f6d33364673dd4bf95b5e0ae367",
"s3_uri": "s3://igvf-files/2023/10/13/142473a2-ee37-4798-82da-3b79cd880a0c/IGVFFI8498LWMX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova2/igvf_009_B06_D_nova_N2_L004_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6377FKZI/",
"accession": "IGVFFI6377FKZI",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T22:52:19.510478+00:00",
"file_format": "fastq",
"file_size": 7772755217,
"href": "/sequence-files/IGVFFI6377FKZI/@@download/IGVFFI6377FKZI.fastq.gz",
"md5sum": "4998f5f329f14def78d58adae189c6db",
"s3_uri": "s3://igvf-files/2023/10/12/e07925bb-c820-4cf4-9877-6dcd92594e6d/IGVFFI6377FKZI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova1/igvf_009_B06_D_nova_N1_L001_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4425UTWA/",
"accession": "IGVFFI4425UTWA",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T23:06:52.214888+00:00",
"file_format": "fastq",
"file_size": 14279534195,
"href": "/sequence-files/IGVFFI4425UTWA/@@download/IGVFFI4425UTWA.fastq.gz",
"md5sum": "2e3af6b9d6800c348716aeb4f0cd29ac",
"s3_uri": "s3://igvf-files/2023/10/12/4d925c17-39c7-4102-a459-e9d77c2426b4/IGVFFI4425UTWA.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova1/igvf_009_B06_D_nova_N1_L003_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI2452AFVN/",
"accession": "IGVFFI2452AFVN",
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T17:31:23.253105+00:00",
"file_format": "yaml",
"file_size": 1350,
"href": "/configuration-files/IGVFFI2452AFVN/@@download/IGVFFI2452AFVN.yaml.gz",
"md5sum": "ccebf69afdabf65483491d297698c9a6",
"s3_uri": "s3://igvf-files/2024/09/18/6dcfcc04-1fcf-4c14-84de-da896e62360d/IGVFFI2452AFVN.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI9360RDVN/",
"accession": "IGVFFI9360RDVN",
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T17:31:24.526288+00:00",
"file_format": "yaml",
"file_size": 1353,
"href": "/configuration-files/IGVFFI9360RDVN/@@download/IGVFFI9360RDVN.yaml.gz",
"md5sum": "b5f0eb3a24743c8a56b7b1cdc5a60aa1",
"s3_uri": "s3://igvf-files/2024/09/18/b08b63e0-2512-4cac-9c27-7dab261a559a/IGVFFI9360RDVN.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI6757ZTJF/",
"accession": "IGVFFI6757ZTJF",
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T17:31:20.866360+00:00",
"file_format": "yaml",
"file_size": 1351,
"href": "/configuration-files/IGVFFI6757ZTJF/@@download/IGVFFI6757ZTJF.yaml.gz",
"md5sum": "4f0cc53f7d745a0a987c5df73ff12de6",
"s3_uri": "s3://igvf-files/2024/09/18/0ede5028-99da-4258-84cb-ff36c2baf8ed/IGVFFI6757ZTJF.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI6256SFOJ/",
"accession": "IGVFFI6256SFOJ",
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T17:31:25.830094+00:00",
"file_format": "yaml",
"file_size": 1351,
"href": "/configuration-files/IGVFFI6256SFOJ/@@download/IGVFFI6256SFOJ.yaml.gz",
"md5sum": "9c8d951e1311321f63782e2e0fccf0b5",
"s3_uri": "s3://igvf-files/2024/09/18/a3efee8c-fd5d-4215-9575-45c3f0c0c648/IGVFFI6256SFOJ.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI2848LWSU/",
"accession": "IGVFFI2848LWSU",
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T17:31:27.210675+00:00",
"file_format": "yaml",
"file_size": 1352,
"href": "/configuration-files/IGVFFI2848LWSU/@@download/IGVFFI2848LWSU.yaml.gz",
"md5sum": "fd793bc122ffbad9d5a655478a51f12f",
"s3_uri": "s3://igvf-files/2024/09/18/f89dcbbe-1257-416b-9ba7-657a9d682736/IGVFFI2848LWSU.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI9722BEKR/",
"accession": "IGVFFI9722BEKR",
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T17:31:28.408125+00:00",
"file_format": "yaml",
"file_size": 1353,
"href": "/configuration-files/IGVFFI9722BEKR/@@download/IGVFFI9722BEKR.yaml.gz",
"md5sum": "a1ff474ba53b19e01dc8e4e4e994ad4d",
"s3_uri": "s3://igvf-files/2024/09/18/74b63b86-c5bf-44ee-ac3a-4c3b982f9c7b/IGVFFI9722BEKR.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI7316KVAZ/",
"accession": "IGVFFI7316KVAZ",
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T17:31:29.649604+00:00",
"file_format": "yaml",
"file_size": 1353,
"href": "/configuration-files/IGVFFI7316KVAZ/@@download/IGVFFI7316KVAZ.yaml.gz",
"md5sum": "62d608a6fee730ff92094f0ad0c446cb",
"s3_uri": "s3://igvf-files/2024/09/18/05f0114a-7ba3-4fac-ab1d-f87375bb0f80/IGVFFI7316KVAZ.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI5390WOQE/",
"accession": "IGVFFI5390WOQE",
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T17:31:22.038002+00:00",
"file_format": "yaml",
"file_size": 1350,
"href": "/configuration-files/IGVFFI5390WOQE/@@download/IGVFFI5390WOQE.yaml.gz",
"md5sum": "c32ccadeb90d38f6965d5ed53c3bfca5",
"s3_uri": "s3://igvf-files/2024/09/18/84f4b27a-190f-48bb-ae46-cc9d4eae5cb2/IGVFFI5390WOQE.yaml.gz",
"status": "released",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS2113PAZI/"
],
"lab": {
"@id": "/labs/ali-mortazavi/",
"title": "Ali Mortazavi, UCI"
},
"notes": "Preferred_assay_titles enum Parse Split-seq has been renamed to be Parse SPLiT-seq.",
"onlist_files": [
"/tabular-files/IGVFFI2591OFQO/",
"/tabular-files/IGVFFI1138MCVX/"
],
"onlist_method": "multi",
"preferred_assay_title": "Parse SPLiT-seq",
"protocols": [
"https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-81wgbxzdylpk/v2",
"https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-14egn334ml5d/v2",
"https://www.protocols.io/view/evercode-wt-mega-v2-2-1-8epv5xxrng1b/v1",
"https://www.protocols.io/view/evercode-single-index-pcr-5jyl82k9rl2w/v1"
],
"release_timestamp": "2025-04-19T01:01:01.125643+00:00",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM4177UWKS/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM4177UWKS",
"aliases": [
"ali-mortazavi:subpool_009_67E"
],
"cellular_sub_pool": "009_67E",
"classifications": [
"tissue",
"multiplexed sample"
],
"disease_terms": [],
"institutional_certificates": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002113/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "kidney",
"term_name": "kidney"
},
{
"@id": "/sample-terms/UBERON_0002369/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "adrenal gland",
"term_name": "adrenal gland"
}
],
"status": "released",
"summary": "multiplexed sample: Mus musculus WSB/EiJ (male, 69 days) kidney tissue; Mus musculus CAST/EiJ (male, 72 days) kidney tissue; ... and 126 more samples",
"taxa": "Mus musculus",
"treatments": []
}
],
"schema_version": "26",
"sequencing_library_types": [
"mRNA enriched"
],
"status": "released",
"strand_specificity": "5 prime to 3 prime",
"submitted_by": {
"@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
"title": "Diane Trout"
},
"submitted_files_timestamp": "2023-10-12T22:45:17.176437+00:00",
"summary": "Parse SPLiT-seq",
"uuid": "70a2fbe0-ac59-4c7f-860e-82046bf8f824"
}