{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS4992SJIR/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS4992SJIR",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinC_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM0211VADB](/in-vitro-systems/IGVFSM0211VADB/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM0211VADB/"
},
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS4992SJIR](/measurement-sets/IGVFDS4992SJIR/) has sequence file(s) [IGVFFI5549CHLU](/sequence-files/IGVFFI5549CHLU/), [IGVFFI0562OYGY](/sequence-files/IGVFFI0562OYGY/), [IGVFFI2423UWAD](/sequence-files/IGVFFI2423UWAD/), [IGVFFI0599ZVIO](/sequence-files/IGVFFI0599ZVIO/), [IGVFFI6684FFVA](/sequence-files/IGVFFI6684FFVA/), [IGVFFI8356EFPN](/sequence-files/IGVFFI8356EFPN/), [IGVFFI3871RFWM](/sequence-files/IGVFFI3871RFWM/), [IGVFFI8254TGUJ](/sequence-files/IGVFFI8254TGUJ/), [IGVFFI3899MXNI](/sequence-files/IGVFFI3899MXNI/), [IGVFFI9936TKIK](/sequence-files/IGVFFI9936TKIK/), [IGVFFI4943BGIB](/sequence-files/IGVFFI4943BGIB/), [IGVFFI8355IDSV](/sequence-files/IGVFFI8355IDSV/), [IGVFFI4161SIGX](/sequence-files/IGVFFI4161SIGX/), [IGVFFI2718UTCH](/sequence-files/IGVFFI2718UTCH/), [IGVFFI9345FNGM](/sequence-files/IGVFFI9345FNGM/), [IGVFFI3329HTMU](/sequence-files/IGVFFI3329HTMU/), [IGVFFI8900WQQK](/sequence-files/IGVFFI8900WQQK/), [IGVFFI0375AEDO](/sequence-files/IGVFFI0375AEDO/), [IGVFFI9278TQFP](/sequence-files/IGVFFI9278TQFP/), [IGVFFI9483VTQL](/sequence-files/IGVFFI9483VTQL/), [IGVFFI7303RRJL](/sequence-files/IGVFFI7303RRJL/), [IGVFFI0260HBHT](/sequence-files/IGVFFI0260HBHT/), [IGVFFI4801NKXE](/sequence-files/IGVFFI4801NKXE/), [IGVFFI2949RROQ](/sequence-files/IGVFFI2949RROQ/), [IGVFFI3677HQDU](/sequence-files/IGVFFI3677HQDU/), [IGVFFI9629BMAF](/sequence-files/IGVFFI9629BMAF/), [IGVFFI9685IBBO](/sequence-files/IGVFFI9685IBBO/), [IGVFFI1357VFYV](/sequence-files/IGVFFI1357VFYV/), [IGVFFI9423TIVC](/sequence-files/IGVFFI9423TIVC/), [IGVFFI7936BICU](/sequence-files/IGVFFI7936BICU/), [IGVFFI9553QXYB](/sequence-files/IGVFFI9553QXYB/), [IGVFFI4130VHAP](/sequence-files/IGVFFI4130VHAP/), [IGVFFI1256JMOD](/sequence-files/IGVFFI1256JMOD/), [IGVFFI3806NOME](/sequence-files/IGVFFI3806NOME/), [IGVFFI5801PIVF](/sequence-files/IGVFFI5801PIVF/), [IGVFFI6011RQXY](/sequence-files/IGVFFI6011RQXY/), [IGVFFI2754CINX](/sequence-files/IGVFFI2754CINX/), [IGVFFI6940ATQU](/sequence-files/IGVFFI6940ATQU/), [IGVFFI5875TDDK](/sequence-files/IGVFFI5875TDDK/), [IGVFFI6819BIOR](/sequence-files/IGVFFI6819BIOR/), [IGVFFI3226VHAN](/sequence-files/IGVFFI3226VHAN/), [IGVFFI6370MJCP](/sequence-files/IGVFFI6370MJCP/), [IGVFFI7880RQBS](/sequence-files/IGVFFI7880RQBS/), [IGVFFI9951PDDP](/sequence-files/IGVFFI9951PDDP/), [IGVFFI0914CAEI](/sequence-files/IGVFFI0914CAEI/), [IGVFFI0471UPCF](/sequence-files/IGVFFI0471UPCF/), [IGVFFI6561AUAU](/sequence-files/IGVFFI6561AUAU/), [IGVFFI1161GFXT](/sequence-files/IGVFFI1161GFXT/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS4992SJIR/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS4992SJIR](/measurement-sets/IGVFDS4992SJIR/) has sequence file(s): [IGVFFI5549CHLU](/sequence-files/IGVFFI5549CHLU/), [IGVFFI0562OYGY](/sequence-files/IGVFFI0562OYGY/), [IGVFFI2423UWAD](/sequence-files/IGVFFI2423UWAD/), [IGVFFI0599ZVIO](/sequence-files/IGVFFI0599ZVIO/), [IGVFFI6684FFVA](/sequence-files/IGVFFI6684FFVA/), [IGVFFI8356EFPN](/sequence-files/IGVFFI8356EFPN/), [IGVFFI3871RFWM](/sequence-files/IGVFFI3871RFWM/), [IGVFFI8254TGUJ](/sequence-files/IGVFFI8254TGUJ/), [IGVFFI3899MXNI](/sequence-files/IGVFFI3899MXNI/), [IGVFFI9936TKIK](/sequence-files/IGVFFI9936TKIK/), [IGVFFI4943BGIB](/sequence-files/IGVFFI4943BGIB/), [IGVFFI8355IDSV](/sequence-files/IGVFFI8355IDSV/), [IGVFFI4161SIGX](/sequence-files/IGVFFI4161SIGX/), [IGVFFI2718UTCH](/sequence-files/IGVFFI2718UTCH/), [IGVFFI9345FNGM](/sequence-files/IGVFFI9345FNGM/), [IGVFFI3329HTMU](/sequence-files/IGVFFI3329HTMU/), [IGVFFI8900WQQK](/sequence-files/IGVFFI8900WQQK/), [IGVFFI0375AEDO](/sequence-files/IGVFFI0375AEDO/), [IGVFFI9278TQFP](/sequence-files/IGVFFI9278TQFP/), [IGVFFI9483VTQL](/sequence-files/IGVFFI9483VTQL/), [IGVFFI7303RRJL](/sequence-files/IGVFFI7303RRJL/), [IGVFFI0260HBHT](/sequence-files/IGVFFI0260HBHT/), [IGVFFI4801NKXE](/sequence-files/IGVFFI4801NKXE/), [IGVFFI2949RROQ](/sequence-files/IGVFFI2949RROQ/), [IGVFFI3677HQDU](/sequence-files/IGVFFI3677HQDU/), [IGVFFI9629BMAF](/sequence-files/IGVFFI9629BMAF/), [IGVFFI9685IBBO](/sequence-files/IGVFFI9685IBBO/), [IGVFFI1357VFYV](/sequence-files/IGVFFI1357VFYV/), [IGVFFI9423TIVC](/sequence-files/IGVFFI9423TIVC/), [IGVFFI7936BICU](/sequence-files/IGVFFI7936BICU/), [IGVFFI9553QXYB](/sequence-files/IGVFFI9553QXYB/), [IGVFFI4130VHAP](/sequence-files/IGVFFI4130VHAP/), [IGVFFI1256JMOD](/sequence-files/IGVFFI1256JMOD/), [IGVFFI3806NOME](/sequence-files/IGVFFI3806NOME/), [IGVFFI5801PIVF](/sequence-files/IGVFFI5801PIVF/), [IGVFFI6011RQXY](/sequence-files/IGVFFI6011RQXY/), [IGVFFI2754CINX](/sequence-files/IGVFFI2754CINX/), [IGVFFI6940ATQU](/sequence-files/IGVFFI6940ATQU/), [IGVFFI5875TDDK](/sequence-files/IGVFFI5875TDDK/), [IGVFFI6819BIOR](/sequence-files/IGVFFI6819BIOR/), [IGVFFI3226VHAN](/sequence-files/IGVFFI3226VHAN/), [IGVFFI6370MJCP](/sequence-files/IGVFFI6370MJCP/), [IGVFFI7880RQBS](/sequence-files/IGVFFI7880RQBS/), [IGVFFI9951PDDP](/sequence-files/IGVFFI9951PDDP/), [IGVFFI0914CAEI](/sequence-files/IGVFFI0914CAEI/), [IGVFFI0471UPCF](/sequence-files/IGVFFI0471UPCF/), [IGVFFI6561AUAU](/sequence-files/IGVFFI6561AUAU/), [IGVFFI1161GFXT](/sequence-files/IGVFFI1161GFXT/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS4992SJIR/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS4992SJIR](/measurement-sets/IGVFDS4992SJIR/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS4992SJIR/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
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"accession": "IGVFDS4869FXYY",
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],
"status": "released"
}
],
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"donors": [
{
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"accession": "IGVFDO1080XFGV",
"aliases": [
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],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
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{
"@id": "/genes/ENSG00000108179/",
"geneid": "ENSG00000108179",
"name": "peptidylprolyl isomerase F",
"status": "released",
"symbol": "PPIF",
"synonyms": [
"rotamase F",
"CYP3",
"cyclophilin F",
"mitochondrial cyclophilin",
"peptidyl-prolyl cis-trans isomerase, mitochondrial",
"CypD",
"Cyp-D",
"cyclophilin 3",
"cyclophilin D",
"CyP-M",
"peptidyl-prolyl cis-trans isomerase F, mitochondrial",
"PPIase F"
]
}
],
"uuid": "2d9fe6f0-79d5-4518-9c3d-6e580ddafa3e"
}