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INDEXED
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MeasurementSet
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IGVFDS4922GNDX
IGVFDS4922GNDX
released
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Json view
File Set Type
experimental data
Summary
snM3C-seq
Assay Term
single nucleus methylation and chromatin conformation capture sequencing
Sample Summaries
Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 7 days
Protocols
https://www.protocols.io/view/snm3c-seq3-kqdg3x6ezg25/v1
Aliases
chongyuan-luo:pgp_snm3c_C39_day7
Attribution
Chongyuan Luo, UCLA
(
HG012079
—
Chongyuan Luo
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0095SYIW
fastq
reads
R1
1
Illumina NovaSeq X
4
2.8 GB
Chongyuan Luo, UCLA
validated
IGVFFI0397DFOL
fastq
reads
R2
1
Illumina NovaSeq X
7
2.9 GB
Chongyuan Luo, UCLA
validated
IGVFFI1155QLOI
fastq
reads
R2
1
Illumina NovaSeq X
6
2.9 GB
Chongyuan Luo, UCLA
validated
IGVFFI1921DJPW
fastq
reads
R2
1
Illumina NovaSeq X
1
2.8 GB
Chongyuan Luo, UCLA
validated
IGVFFI2484OXWD
fastq
reads
R1
1
Illumina NovaSeq X
6
2.8 GB
Chongyuan Luo, UCLA
validated
IGVFFI3086CMIE
fastq
reads
R1
1
Illumina NovaSeq X
7
2.8 GB
Chongyuan Luo, UCLA
validated
IGVFFI3860DVWM
fastq
reads
R1
1
Illumina NovaSeq X
1
2.8 GB
Chongyuan Luo, UCLA
validated
IGVFFI4246ADVB
fastq
reads
R1
1
Illumina NovaSeq X
8
2.8 GB
Chongyuan Luo, UCLA
validated
IGVFFI4508WNFY
fastq
reads
R2
1
Illumina NovaSeq X
8
2.8 GB
Chongyuan Luo, UCLA
validated
IGVFFI5689PGMS
fastq
reads
R1
1
Illumina NovaSeq X
5
2.9 GB
Chongyuan Luo, UCLA
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM2359RGPU
InVitroSystem
fibroblast
Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 7 days
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO4068JJIT
chongyuan-luo:C39
unspecified
Homo sapiens