{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS4852VNMA/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS4852VNMA",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep2-FFrep2-BinC_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM5940SWOY](/in-vitro-systems/IGVFSM5940SWOY/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM5940SWOY/"
},
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS4852VNMA](/measurement-sets/IGVFDS4852VNMA/) has sequence file(s) [IGVFFI9695NQYQ](/sequence-files/IGVFFI9695NQYQ/), [IGVFFI2097ZFJO](/sequence-files/IGVFFI2097ZFJO/), [IGVFFI7920NTXB](/sequence-files/IGVFFI7920NTXB/), [IGVFFI3027UAID](/sequence-files/IGVFFI3027UAID/), [IGVFFI3392TSTR](/sequence-files/IGVFFI3392TSTR/), [IGVFFI6091YVJO](/sequence-files/IGVFFI6091YVJO/), [IGVFFI8955ESDA](/sequence-files/IGVFFI8955ESDA/), [IGVFFI1698UCNY](/sequence-files/IGVFFI1698UCNY/), [IGVFFI8497PPDU](/sequence-files/IGVFFI8497PPDU/), [IGVFFI6163RBZZ](/sequence-files/IGVFFI6163RBZZ/), [IGVFFI6419AKER](/sequence-files/IGVFFI6419AKER/), [IGVFFI9149EIBE](/sequence-files/IGVFFI9149EIBE/), [IGVFFI5188GNCD](/sequence-files/IGVFFI5188GNCD/), [IGVFFI2368KUJL](/sequence-files/IGVFFI2368KUJL/), [IGVFFI9069WYAM](/sequence-files/IGVFFI9069WYAM/), [IGVFFI7004EZNE](/sequence-files/IGVFFI7004EZNE/), [IGVFFI5742MUGU](/sequence-files/IGVFFI5742MUGU/), [IGVFFI6643OFJW](/sequence-files/IGVFFI6643OFJW/), [IGVFFI3707TNKP](/sequence-files/IGVFFI3707TNKP/), [IGVFFI7397EKNW](/sequence-files/IGVFFI7397EKNW/), [IGVFFI9924HYJT](/sequence-files/IGVFFI9924HYJT/), [IGVFFI0467LSPA](/sequence-files/IGVFFI0467LSPA/), [IGVFFI5381OAFZ](/sequence-files/IGVFFI5381OAFZ/), [IGVFFI3302BNTV](/sequence-files/IGVFFI3302BNTV/), [IGVFFI2055YBKY](/sequence-files/IGVFFI2055YBKY/), [IGVFFI0827UVKC](/sequence-files/IGVFFI0827UVKC/), [IGVFFI2572XQJC](/sequence-files/IGVFFI2572XQJC/), [IGVFFI5709MHPH](/sequence-files/IGVFFI5709MHPH/), [IGVFFI5185UQCS](/sequence-files/IGVFFI5185UQCS/), [IGVFFI2889XXGS](/sequence-files/IGVFFI2889XXGS/), [IGVFFI7629FYOP](/sequence-files/IGVFFI7629FYOP/), [IGVFFI2505TXTG](/sequence-files/IGVFFI2505TXTG/), [IGVFFI8021VYQB](/sequence-files/IGVFFI8021VYQB/), [IGVFFI7795KGDQ](/sequence-files/IGVFFI7795KGDQ/), [IGVFFI4548ADIC](/sequence-files/IGVFFI4548ADIC/), [IGVFFI4081NYFS](/sequence-files/IGVFFI4081NYFS/), [IGVFFI3275BTUR](/sequence-files/IGVFFI3275BTUR/), [IGVFFI4819PAZA](/sequence-files/IGVFFI4819PAZA/), [IGVFFI6824LCAA](/sequence-files/IGVFFI6824LCAA/), [IGVFFI7740RHKM](/sequence-files/IGVFFI7740RHKM/), [IGVFFI3151VCTM](/sequence-files/IGVFFI3151VCTM/), [IGVFFI8482JNFU](/sequence-files/IGVFFI8482JNFU/), [IGVFFI5647AVPS](/sequence-files/IGVFFI5647AVPS/), [IGVFFI0727FXUL](/sequence-files/IGVFFI0727FXUL/), [IGVFFI3214MEFX](/sequence-files/IGVFFI3214MEFX/), [IGVFFI9404JQYW](/sequence-files/IGVFFI9404JQYW/), [IGVFFI8355SQSX](/sequence-files/IGVFFI8355SQSX/), [IGVFFI9583LCAE](/sequence-files/IGVFFI9583LCAE/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS4852VNMA/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS4852VNMA](/measurement-sets/IGVFDS4852VNMA/) has sequence file(s): [IGVFFI9695NQYQ](/sequence-files/IGVFFI9695NQYQ/), [IGVFFI2097ZFJO](/sequence-files/IGVFFI2097ZFJO/), [IGVFFI7920NTXB](/sequence-files/IGVFFI7920NTXB/), [IGVFFI3027UAID](/sequence-files/IGVFFI3027UAID/), [IGVFFI3392TSTR](/sequence-files/IGVFFI3392TSTR/), [IGVFFI6091YVJO](/sequence-files/IGVFFI6091YVJO/), [IGVFFI8955ESDA](/sequence-files/IGVFFI8955ESDA/), [IGVFFI1698UCNY](/sequence-files/IGVFFI1698UCNY/), [IGVFFI8497PPDU](/sequence-files/IGVFFI8497PPDU/), [IGVFFI6163RBZZ](/sequence-files/IGVFFI6163RBZZ/), [IGVFFI6419AKER](/sequence-files/IGVFFI6419AKER/), [IGVFFI9149EIBE](/sequence-files/IGVFFI9149EIBE/), [IGVFFI5188GNCD](/sequence-files/IGVFFI5188GNCD/), [IGVFFI2368KUJL](/sequence-files/IGVFFI2368KUJL/), [IGVFFI9069WYAM](/sequence-files/IGVFFI9069WYAM/), [IGVFFI7004EZNE](/sequence-files/IGVFFI7004EZNE/), [IGVFFI5742MUGU](/sequence-files/IGVFFI5742MUGU/), [IGVFFI6643OFJW](/sequence-files/IGVFFI6643OFJW/), [IGVFFI3707TNKP](/sequence-files/IGVFFI3707TNKP/), [IGVFFI7397EKNW](/sequence-files/IGVFFI7397EKNW/), [IGVFFI9924HYJT](/sequence-files/IGVFFI9924HYJT/), [IGVFFI0467LSPA](/sequence-files/IGVFFI0467LSPA/), [IGVFFI5381OAFZ](/sequence-files/IGVFFI5381OAFZ/), [IGVFFI3302BNTV](/sequence-files/IGVFFI3302BNTV/), [IGVFFI2055YBKY](/sequence-files/IGVFFI2055YBKY/), [IGVFFI0827UVKC](/sequence-files/IGVFFI0827UVKC/), [IGVFFI2572XQJC](/sequence-files/IGVFFI2572XQJC/), [IGVFFI5709MHPH](/sequence-files/IGVFFI5709MHPH/), [IGVFFI5185UQCS](/sequence-files/IGVFFI5185UQCS/), [IGVFFI2889XXGS](/sequence-files/IGVFFI2889XXGS/), [IGVFFI7629FYOP](/sequence-files/IGVFFI7629FYOP/), [IGVFFI2505TXTG](/sequence-files/IGVFFI2505TXTG/), [IGVFFI8021VYQB](/sequence-files/IGVFFI8021VYQB/), [IGVFFI7795KGDQ](/sequence-files/IGVFFI7795KGDQ/), [IGVFFI4548ADIC](/sequence-files/IGVFFI4548ADIC/), [IGVFFI4081NYFS](/sequence-files/IGVFFI4081NYFS/), [IGVFFI3275BTUR](/sequence-files/IGVFFI3275BTUR/), [IGVFFI4819PAZA](/sequence-files/IGVFFI4819PAZA/), [IGVFFI6824LCAA](/sequence-files/IGVFFI6824LCAA/), [IGVFFI7740RHKM](/sequence-files/IGVFFI7740RHKM/), [IGVFFI3151VCTM](/sequence-files/IGVFFI3151VCTM/), [IGVFFI8482JNFU](/sequence-files/IGVFFI8482JNFU/), [IGVFFI5647AVPS](/sequence-files/IGVFFI5647AVPS/), [IGVFFI0727FXUL](/sequence-files/IGVFFI0727FXUL/), [IGVFFI3214MEFX](/sequence-files/IGVFFI3214MEFX/), [IGVFFI9404JQYW](/sequence-files/IGVFFI9404JQYW/), [IGVFFI8355SQSX](/sequence-files/IGVFFI8355SQSX/), [IGVFFI9583LCAE](/sequence-files/IGVFFI9583LCAE/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS4852VNMA/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS4852VNMA](/measurement-sets/IGVFDS4852VNMA/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS4852VNMA/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
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],
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}
],
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{
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"aliases": [
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],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
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"targeted_genes": [
{
"@id": "/genes/ENSG00000108179/",
"geneid": "ENSG00000108179",
"name": "peptidylprolyl isomerase F",
"status": "released",
"symbol": "PPIF",
"synonyms": [
"rotamase F",
"CYP3",
"cyclophilin F",
"mitochondrial cyclophilin",
"peptidyl-prolyl cis-trans isomerase, mitochondrial",
"CypD",
"Cyp-D",
"cyclophilin 3",
"cyclophilin D",
"CyP-M",
"peptidyl-prolyl cis-trans isomerase F, mitochondrial",
"PPIase F"
]
}
],
"uuid": "264d7d29-2831-46f5-89b0-b7a720d7c232"
}