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INDEXED
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MeasurementSet
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IGVFDS4808GJDM
IGVFDS4808GJDM
released
Json view
File Set Type
experimental data
Summary
RNA-seq integrating a control transduction expression vector library
Assay Term
bulk RNA-seq assay
Sample Summaries
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
Construct Library Sets
IGVFDS5584SPIV
control transduction expression vector library
Protocols
https://www.protocols.io/view/rnaseq-of-primary-human-t-cells-overexpressing-bat-c5pdy5i6
Aliases
charles-gersbach:cd8-tcells-rna-seq-chronic-activation-gfp-rep3
Publications
Transcriptional and epigenetic regulators of human CD8+ T cell function identified through orthogonal CRISPR screens
Sequencing Results (Illumina)
2 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI2464JMWS
fastq
reads
R2
3
Illumina NovaSeq 6000
1
1.8 GB
Charles Gersbach, Duke
validated
IGVFFI9773SEVN
fastq
reads
R1
3
Illumina NovaSeq 6000
1
1.8 GB
Charles Gersbach, Duke
validated
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM4633QTQY
PrimaryCell
CD8-positive, alpha-beta memory T cell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO8289ZMDD
charles-gersbach:cd8-tcells-donor-11
unspecified
Homo sapiens
File Sets Using This Measurement Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS3105CGSW
AnalysisSet
RNA-seq: transcriptome alignments
charles-gersbach:cd8-tcells-intermediate-analysis-rna-seq-batf3-overexpression-gfp
Charles Gersbach, Duke
File Sets Controlled by This Measurement Set
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS1336JNHX
MeasurementSet
RNA-seq integrating an expression vector library of BATF3
charles-gersbach:cd8-tcells-rna-seq-chronic-activation-batf3-rep3
Charles Gersbach, Duke
Attribution
Award
HG012053
Principal Investigator(s)
Charles Gersbach
,
Gregory Crawford
,
Tim Reddy
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke