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INDEXED
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MeasurementSet
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IGVFDS4803WKTQ
IGVFDS4803WKTQ
released
Json view
File Set Type
experimental data
Summary
Parse SPLiT-seq
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples
Protocols
https://www.protocols.io/view/evercode-wt-v2-2-1-eq2lyj9relx9/v1
https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-cryopreser-4r3l22y2pl1y/v1
https://www.protocols.io/view/cdna-exome-capture-v1-0-1-36wgq3b83lk5/v1
https://www.protocols.io/view/ont-library-prep-for-split-seq-cdna-eq2lyj1xmlx9/v1
Aliases
ali-mortazavi:B01_13G_nanopore
Sequencing Results
2 items
Accession
File Format
Content Type
Sequencing Run
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI2224QAWI
fastq
reads
1
ONT PromethION 2 Solo
83 GB
Ali Mortazavi, UCI
validated
IGVFFI3397RQUC
pod5
Nanopore reads
1
ONT PromethION 2 Solo
PAO05399
1.1 TB
Ali Mortazavi, UCI
validated
Samples
Donors
Assay Details
Sequencing Library Types
exome capture
Attribution
Award
HG012077
Principal Investigator(s)
Lior Pachter
,
Kim Green
,
Grant MacGregor
,
Ali Mortazavi
,
Barbara Wold
Contact P.I.
Ali Mortazavi
Lab
Ali Mortazavi, UCI