{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS4752FLON/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS4752FLON",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep3-BinB_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM1838USXI](/in-vitro-systems/IGVFSM1838USXI/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM1838USXI/"
},
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS4752FLON](/measurement-sets/IGVFDS4752FLON/) has sequence file(s) [IGVFFI4064LQPH](/sequence-files/IGVFFI4064LQPH/), [IGVFFI7666HMMV](/sequence-files/IGVFFI7666HMMV/), [IGVFFI9608CCLH](/sequence-files/IGVFFI9608CCLH/), [IGVFFI8562BHLG](/sequence-files/IGVFFI8562BHLG/), [IGVFFI3807DWRT](/sequence-files/IGVFFI3807DWRT/), [IGVFFI2362JMED](/sequence-files/IGVFFI2362JMED/), [IGVFFI9512QSXF](/sequence-files/IGVFFI9512QSXF/), [IGVFFI4106OCGW](/sequence-files/IGVFFI4106OCGW/), [IGVFFI4620UWTA](/sequence-files/IGVFFI4620UWTA/), [IGVFFI1749VWLS](/sequence-files/IGVFFI1749VWLS/), [IGVFFI8418DFET](/sequence-files/IGVFFI8418DFET/), [IGVFFI1665PBUX](/sequence-files/IGVFFI1665PBUX/), [IGVFFI2720CWNA](/sequence-files/IGVFFI2720CWNA/), [IGVFFI9058GJCO](/sequence-files/IGVFFI9058GJCO/), [IGVFFI8233CCAJ](/sequence-files/IGVFFI8233CCAJ/), [IGVFFI4315UCLC](/sequence-files/IGVFFI4315UCLC/), [IGVFFI9218RWCU](/sequence-files/IGVFFI9218RWCU/), [IGVFFI2966KTVV](/sequence-files/IGVFFI2966KTVV/), [IGVFFI2816IJOL](/sequence-files/IGVFFI2816IJOL/), [IGVFFI3061PCTG](/sequence-files/IGVFFI3061PCTG/), [IGVFFI2013KLCS](/sequence-files/IGVFFI2013KLCS/), [IGVFFI5457UYFE](/sequence-files/IGVFFI5457UYFE/), [IGVFFI5253KQNA](/sequence-files/IGVFFI5253KQNA/), [IGVFFI3560JRAD](/sequence-files/IGVFFI3560JRAD/), [IGVFFI4224TVST](/sequence-files/IGVFFI4224TVST/), [IGVFFI2889NFNT](/sequence-files/IGVFFI2889NFNT/), [IGVFFI4196IBSF](/sequence-files/IGVFFI4196IBSF/), [IGVFFI6885RUCL](/sequence-files/IGVFFI6885RUCL/), [IGVFFI3401FTPY](/sequence-files/IGVFFI3401FTPY/), [IGVFFI0601WFWF](/sequence-files/IGVFFI0601WFWF/), [IGVFFI0944CZSS](/sequence-files/IGVFFI0944CZSS/), [IGVFFI5454XMWM](/sequence-files/IGVFFI5454XMWM/), [IGVFFI4171NTKF](/sequence-files/IGVFFI4171NTKF/), [IGVFFI8614YIIT](/sequence-files/IGVFFI8614YIIT/), [IGVFFI9735OCYM](/sequence-files/IGVFFI9735OCYM/), [IGVFFI2673ZSJO](/sequence-files/IGVFFI2673ZSJO/), [IGVFFI3590RFFA](/sequence-files/IGVFFI3590RFFA/), [IGVFFI2309FCAH](/sequence-files/IGVFFI2309FCAH/), [IGVFFI1934NWYG](/sequence-files/IGVFFI1934NWYG/), [IGVFFI6681LQPA](/sequence-files/IGVFFI6681LQPA/), [IGVFFI6451VQAS](/sequence-files/IGVFFI6451VQAS/), [IGVFFI4406DBQR](/sequence-files/IGVFFI4406DBQR/), [IGVFFI2455DONN](/sequence-files/IGVFFI2455DONN/), [IGVFFI5663OEVS](/sequence-files/IGVFFI5663OEVS/), [IGVFFI8015VDZA](/sequence-files/IGVFFI8015VDZA/), [IGVFFI7546AOIT](/sequence-files/IGVFFI7546AOIT/), [IGVFFI6356SBUM](/sequence-files/IGVFFI6356SBUM/), [IGVFFI5911XZRL](/sequence-files/IGVFFI5911XZRL/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS4752FLON/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS4752FLON](/measurement-sets/IGVFDS4752FLON/) has sequence file(s): [IGVFFI4064LQPH](/sequence-files/IGVFFI4064LQPH/), [IGVFFI7666HMMV](/sequence-files/IGVFFI7666HMMV/), [IGVFFI9608CCLH](/sequence-files/IGVFFI9608CCLH/), [IGVFFI8562BHLG](/sequence-files/IGVFFI8562BHLG/), [IGVFFI3807DWRT](/sequence-files/IGVFFI3807DWRT/), [IGVFFI2362JMED](/sequence-files/IGVFFI2362JMED/), [IGVFFI9512QSXF](/sequence-files/IGVFFI9512QSXF/), [IGVFFI4106OCGW](/sequence-files/IGVFFI4106OCGW/), [IGVFFI4620UWTA](/sequence-files/IGVFFI4620UWTA/), [IGVFFI1749VWLS](/sequence-files/IGVFFI1749VWLS/), [IGVFFI8418DFET](/sequence-files/IGVFFI8418DFET/), [IGVFFI1665PBUX](/sequence-files/IGVFFI1665PBUX/), [IGVFFI2720CWNA](/sequence-files/IGVFFI2720CWNA/), [IGVFFI9058GJCO](/sequence-files/IGVFFI9058GJCO/), [IGVFFI8233CCAJ](/sequence-files/IGVFFI8233CCAJ/), [IGVFFI4315UCLC](/sequence-files/IGVFFI4315UCLC/), [IGVFFI9218RWCU](/sequence-files/IGVFFI9218RWCU/), [IGVFFI2966KTVV](/sequence-files/IGVFFI2966KTVV/), [IGVFFI2816IJOL](/sequence-files/IGVFFI2816IJOL/), [IGVFFI3061PCTG](/sequence-files/IGVFFI3061PCTG/), [IGVFFI2013KLCS](/sequence-files/IGVFFI2013KLCS/), [IGVFFI5457UYFE](/sequence-files/IGVFFI5457UYFE/), [IGVFFI5253KQNA](/sequence-files/IGVFFI5253KQNA/), [IGVFFI3560JRAD](/sequence-files/IGVFFI3560JRAD/), [IGVFFI4224TVST](/sequence-files/IGVFFI4224TVST/), [IGVFFI2889NFNT](/sequence-files/IGVFFI2889NFNT/), [IGVFFI4196IBSF](/sequence-files/IGVFFI4196IBSF/), [IGVFFI6885RUCL](/sequence-files/IGVFFI6885RUCL/), [IGVFFI3401FTPY](/sequence-files/IGVFFI3401FTPY/), [IGVFFI0601WFWF](/sequence-files/IGVFFI0601WFWF/), [IGVFFI0944CZSS](/sequence-files/IGVFFI0944CZSS/), [IGVFFI5454XMWM](/sequence-files/IGVFFI5454XMWM/), [IGVFFI4171NTKF](/sequence-files/IGVFFI4171NTKF/), [IGVFFI8614YIIT](/sequence-files/IGVFFI8614YIIT/), [IGVFFI9735OCYM](/sequence-files/IGVFFI9735OCYM/), [IGVFFI2673ZSJO](/sequence-files/IGVFFI2673ZSJO/), [IGVFFI3590RFFA](/sequence-files/IGVFFI3590RFFA/), [IGVFFI2309FCAH](/sequence-files/IGVFFI2309FCAH/), [IGVFFI1934NWYG](/sequence-files/IGVFFI1934NWYG/), [IGVFFI6681LQPA](/sequence-files/IGVFFI6681LQPA/), [IGVFFI6451VQAS](/sequence-files/IGVFFI6451VQAS/), [IGVFFI4406DBQR](/sequence-files/IGVFFI4406DBQR/), [IGVFFI2455DONN](/sequence-files/IGVFFI2455DONN/), [IGVFFI5663OEVS](/sequence-files/IGVFFI5663OEVS/), [IGVFFI8015VDZA](/sequence-files/IGVFFI8015VDZA/), [IGVFFI7546AOIT](/sequence-files/IGVFFI7546AOIT/), [IGVFFI6356SBUM](/sequence-files/IGVFFI6356SBUM/), [IGVFFI5911XZRL](/sequence-files/IGVFFI5911XZRL/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS4752FLON/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS4752FLON](/measurement-sets/IGVFDS4752FLON/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS4752FLON/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
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{
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"accession": "IGVFDS4869FXYY",
"aliases": [
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],
"status": "released"
}
],
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"creation_timestamp": "2023-12-13T08:48:06.644925+00:00",
"donors": [
{
"@id": "/human-donors/IGVFDO1080XFGV/",
"accession": "IGVFDO1080XFGV",
"aliases": [
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],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
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},
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"CyP-M",
"peptidyl-prolyl cis-trans isomerase F, mitochondrial",
"PPIase F"
]
}
],
"uuid": "486481b8-27b4-4eef-96cd-a835536b000a"
}