{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS4752BWME",
"aliases": [
"buenrostro-bernstein:scRNA Lib 611"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002631/",
"assay_slims": [
"gene expression"
],
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "Tissue [IGVFSM4321WQTD](/tissues/IGVFSM4321WQTD/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/tissues/IGVFSM4321WQTD/"
},
{
"category": "missing publication",
"detail": "Measurement set [IGVFDS4752BWME](/measurement-sets/IGVFDS4752BWME/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/measurement-sets/IGVFDS4752BWME/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS4752BWME](/measurement-sets/IGVFDS4752BWME/) has in progress subobject tabular file [IGVFFI9034HUWG](/tabular-files/IGVFFI9034HUWG/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS4752BWME/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS4752BWME](/measurement-sets/IGVFDS4752BWME/) has in progress subobject tabular file [IGVFFI0400MBIM](/tabular-files/IGVFFI0400MBIM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS4752BWME/"
}
],
"NOT_COMPLIANT": [
{
"category": "missing strand specificity",
"detail": "Measurement set [IGVFDS4752BWME](/measurement-sets/IGVFDS4752BWME/) is missing required `strand_specificity`. Single-cell assays are expected to specify strand specificity.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_strand_specificity",
"path": "/measurement-sets/IGVFDS4752BWME/"
}
],
"WARNING": [
{
"category": "missing age",
"detail": "Tissue [IGVFSM4321WQTD](/tissues/IGVFSM4321WQTD/) is missing `upper_bound_age`, `lower_bound_age`, and `age_units`. Tissues, primary cells, and whole organisms are expected to specify a lower bound age, upper bound age, and age units.",
"level": 40,
"level_name": "WARNING",
"name": "audit_biosample_age",
"path": "/tissues/IGVFSM4321WQTD/"
}
]
},
"award": {
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"component": "mapping",
"contact_pi": {
"@id": "/users/33c6eb70-e143-4f77-9661-4b3905737daa/",
"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
"control_for": [],
"creation_timestamp": "2025-03-09T15:52:02.054752+00:00",
"donors": [
{
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"aliases": [
"buenrostro-bernstein:Donor 2047"
],
"sex": "unspecified",
"status": "released",
"taxa": "Mus musculus"
}
],
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"file_set_type": "experimental data",
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],
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},
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],
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},
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],
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"creation_timestamp": "2025-03-09T15:59:36.861751+00:00",
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"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
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"upload_status": "validated"
},
{
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],
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"creation_timestamp": "2025-03-09T15:59:51.122018+00:00",
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"sequencing_platform": {
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"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
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"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5346KGGA/",
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"buenrostro-bernstein:SS-LS_5383_R2"
],
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"controlled_access": false,
"creation_timestamp": "2025-03-09T15:59:38.163933+00:00",
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"href": "/sequence-files/IGVFFI5346KGGA/@@download/IGVFFI5346KGGA.fastq.gz",
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"term_name": "Illumina NovaSeq 6000"
},
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},
{
"@id": "/sequence-files/IGVFFI1887QOUN/",
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],
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"creation_timestamp": "2025-03-09T15:59:52.767571+00:00",
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},
{
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},
{
"@id": "/configuration-files/IGVFFI7669KDDW/",
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],
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{
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"upload_status": "validated"
}
],
"input_for": [
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],
"lab": {
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"title": "Jason Buenrostro, Broad"
},
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],
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"preferred_assay_title": "SHARE-seq",
"protocols": [
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"accession": "IGVFDS5083GBBF",
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{
"@id": "/measurement-sets/IGVFDS6289YQBN/",
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},
{
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"release_timestamp": "2025-03-28T21:19:08.592717+00:00",
"samples": [
{
"@id": "/tissues/IGVFSM4321WQTD/",
"@type": [
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"Biosample",
"Sample",
"Item"
],
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"aliases": [
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],
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"institutional_certificates": [],
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{
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"@type": [
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],
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}
],
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}
],
"schema_version": "26",
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"submitted_by": {
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"uuid": "8f9b94be-7c93-48fb-9ad8-2a61d9024691"
}