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IGVFDS4747BMDE

released
File Set Type
experimental data
Summary
Parse SPLiT-seq
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
  • multiplexed sample: Mus musculus AJ (male, 69 days) epididymis tissue; Mus musculus PWK/PhJ (female, 69 days) oviduct tissue; ... and 190 more samples
Protocols
Aliases
ali-mortazavi:008_67E_illumina
Attribution
Ali Mortazavi, UCI

Sequencing Results (Illumina)

8 items
Read Names
fastq
reads
R1
1
Read 1
H2W3JDSX7
1
23 GB
Ali Mortazavi, UCI
validated
fastq
reads
R2
3
Read 2
H2W3JDSX7
3
13 GB
Ali Mortazavi, UCI
validated
fastq
reads
R2
1
Read 2
H2W3JDSX7
1
13 GB
Ali Mortazavi, UCI
validated
fastq
reads
R2
2
Read 2
H2W3JDSX7
2
13 GB
Ali Mortazavi, UCI
validated
fastq
reads
R2
4
Read 2
H2W3JDSX7
4
13 GB
Ali Mortazavi, UCI
validated
fastq
reads
R1
2
Read 1
H2W3JDSX7
2
23 GB
Ali Mortazavi, UCI
validated
fastq
reads
R1
3
Read 1
H2W3JDSX7
3
23 GB
Ali Mortazavi, UCI
validated
fastq
reads
R1
4
Read 1
H2W3JDSX7
4
22 GB
Ali Mortazavi, UCI
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Mus musculus AJ (male, 69 days) epididymis tissue; Mus musculus PWK/PhJ (female, 69 days) oviduct tissue; ... and 190 more samples

Donors

65 items
Aliases
  • ali-mortazavi:018_B6J_10F
female
Mus musculus
  • ali-mortazavi:041_129S1J_10M
male
Mus musculus
  • ali-mortazavi:030_AJ_10F
female
Mus musculus
  • ali-mortazavi:052_NZOJ_10F
female
Mus musculus
  • ali-mortazavi:057_WSBJ_10M
male
Mus musculus
  • ali-mortazavi:080_PWKJ_10F
female
Mus musculus
  • ali-mortazavi:069_NODJ_10M
male
Mus musculus
  • ali-mortazavi:058_WSBJ_10F
female
Mus musculus
  • ali-mortazavi:035_AJ_10M
male
Mus musculus
  • ali-mortazavi:088_CASTJ_10F
female
Mus musculus

Assay Details

Sequencing Library Types
mRNA enriched

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
Parse SPLiT-seq: sparse gene count matrix
  • ali-mortazavi:igvf_008_Subpool_6_total+core
Ali Mortazavi, UCI