{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
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"aliases": [
"bradley-bernstein:scATAC Lib 26",
"buenrostro-bernstein:scATAC Lib 26"
],
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"@id": "/assay-terms/OBI_0002764/",
"status": "released",
"term_name": "single-cell ATAC-seq"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM0894LXUU](/primary-cells/IGVFSM0894LXUU/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM0894LXUU/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS4734AIKT](/measurement-sets/IGVFDS4734AIKT/) has sequence file(s): [IGVFFI0996WAXW](/sequence-files/IGVFFI0996WAXW/), [IGVFFI1816QIYS](/sequence-files/IGVFFI1816QIYS/), [IGVFFI7730JUPR](/sequence-files/IGVFFI7730JUPR/), [IGVFFI7010QHBB](/sequence-files/IGVFFI7010QHBB/), [IGVFFI8503EAKW](/sequence-files/IGVFFI8503EAKW/), [IGVFFI8526GNZS](/sequence-files/IGVFFI8526GNZS/), [IGVFFI8792XXIN](/sequence-files/IGVFFI8792XXIN/), [IGVFFI2988RTSV](/sequence-files/IGVFFI2988RTSV/), [IGVFFI2439WJKB](/sequence-files/IGVFFI2439WJKB/), [IGVFFI1796WGNA](/sequence-files/IGVFFI1796WGNA/), [IGVFFI2627CDLL](/sequence-files/IGVFFI2627CDLL/), [IGVFFI1008URLK](/sequence-files/IGVFFI1008URLK/), [IGVFFI9987NOFL](/sequence-files/IGVFFI9987NOFL/), [IGVFFI8614CDXT](/sequence-files/IGVFFI8614CDXT/), [IGVFFI3055ORRP](/sequence-files/IGVFFI3055ORRP/), [IGVFFI9800URMA](/sequence-files/IGVFFI9800URMA/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS4734AIKT/"
}
],
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{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS4734AIKT](/measurement-sets/IGVFDS4734AIKT/) has an `assay_term` of single-cell ATAC-seq but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS4734AIKT/"
}
]
},
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},
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"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 5), female, Homo sapiens (19 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:25:27.623552+00:00",
"summary": "single-cell ATAC-seq (SHARE-seq)",
"uuid": "9d87bd0e-e55b-48e0-a72b-fde81811b317"
}