IGVFDS4670KYYZ

released
{
    "@context": "/terms/",
    "@id": "/measurement-sets/IGVFDS4670KYYZ/",
    "@type": [
        "MeasurementSet",
        "FileSet",
        "Item"
    ],
    "accession": "IGVFDS4670KYYZ",
    "aliases": [
        "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB_AmpliconSequencing"
    ],
    "assay_term": {
        "@id": "/assay-terms/OBI_0003661/",
        "assay_slims": [
            "CRISPR screens"
        ],
        "status": "released",
        "term_name": "in vitro CRISPR screen using flow cytometry"
    },
    "audit": {
        "INTERNAL_ACTION": [
            {
                "category": "missing publication",
                "detail": "Measurement set [IGVFDS4670KYYZ](/measurement-sets/IGVFDS4670KYYZ/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_file_set_missing_publication",
                "path": "/measurement-sets/IGVFDS4670KYYZ/"
            },
            {
                "category": "missing sequencing kit",
                "detail": "Measurement set [IGVFDS4670KYYZ](/measurement-sets/IGVFDS4670KYYZ/) has sequence file(s) [IGVFFI5515WMAP](/sequence-files/IGVFFI5515WMAP/), [IGVFFI5825CPPI](/sequence-files/IGVFFI5825CPPI/), [IGVFFI0891GHBS](/sequence-files/IGVFFI0891GHBS/), [IGVFFI9735KPOY](/sequence-files/IGVFFI9735KPOY/), [IGVFFI1930WYDB](/sequence-files/IGVFFI1930WYDB/), [IGVFFI0188PLMA](/sequence-files/IGVFFI0188PLMA/), [IGVFFI3697ELZW](/sequence-files/IGVFFI3697ELZW/), [IGVFFI7935LZEB](/sequence-files/IGVFFI7935LZEB/), [IGVFFI6473WCCA](/sequence-files/IGVFFI6473WCCA/), [IGVFFI1618NTXS](/sequence-files/IGVFFI1618NTXS/), [IGVFFI9241EJHI](/sequence-files/IGVFFI9241EJHI/), [IGVFFI6138BEDC](/sequence-files/IGVFFI6138BEDC/), [IGVFFI6090LUFD](/sequence-files/IGVFFI6090LUFD/), [IGVFFI9028MKBY](/sequence-files/IGVFFI9028MKBY/), [IGVFFI2324NATU](/sequence-files/IGVFFI2324NATU/), [IGVFFI1267WKCI](/sequence-files/IGVFFI1267WKCI/), [IGVFFI3701VQZK](/sequence-files/IGVFFI3701VQZK/), [IGVFFI2450MTRN](/sequence-files/IGVFFI2450MTRN/), [IGVFFI5480ZZJF](/sequence-files/IGVFFI5480ZZJF/), [IGVFFI8545WBNH](/sequence-files/IGVFFI8545WBNH/), [IGVFFI2596LZGM](/sequence-files/IGVFFI2596LZGM/), [IGVFFI1656FMUD](/sequence-files/IGVFFI1656FMUD/), [IGVFFI8417PWAV](/sequence-files/IGVFFI8417PWAV/), [IGVFFI0491YOPG](/sequence-files/IGVFFI0491YOPG/), [IGVFFI7548XQCE](/sequence-files/IGVFFI7548XQCE/), [IGVFFI7687UKFE](/sequence-files/IGVFFI7687UKFE/), [IGVFFI5870OEWI](/sequence-files/IGVFFI5870OEWI/), [IGVFFI6831GAHM](/sequence-files/IGVFFI6831GAHM/), [IGVFFI9171MTAP](/sequence-files/IGVFFI9171MTAP/), [IGVFFI4889NNJC](/sequence-files/IGVFFI4889NNJC/), [IGVFFI7390SQZF](/sequence-files/IGVFFI7390SQZF/), [IGVFFI9229UGYP](/sequence-files/IGVFFI9229UGYP/), [IGVFFI9998LGTM](/sequence-files/IGVFFI9998LGTM/), [IGVFFI8765NOHD](/sequence-files/IGVFFI8765NOHD/), [IGVFFI8426TADQ](/sequence-files/IGVFFI8426TADQ/), [IGVFFI0573DKSX](/sequence-files/IGVFFI0573DKSX/), [IGVFFI2481LCHM](/sequence-files/IGVFFI2481LCHM/), [IGVFFI1103JKJA](/sequence-files/IGVFFI1103JKJA/), [IGVFFI9562EIRT](/sequence-files/IGVFFI9562EIRT/), [IGVFFI2241UJGM](/sequence-files/IGVFFI2241UJGM/), [IGVFFI0557PYCK](/sequence-files/IGVFFI0557PYCK/), [IGVFFI6213HMWS](/sequence-files/IGVFFI6213HMWS/), [IGVFFI7475HSYH](/sequence-files/IGVFFI7475HSYH/), [IGVFFI6265FFWL](/sequence-files/IGVFFI6265FFWL/), [IGVFFI4755OYJJ](/sequence-files/IGVFFI4755OYJJ/), [IGVFFI4935LPFU](/sequence-files/IGVFFI4935LPFU/), [IGVFFI7419GTGG](/sequence-files/IGVFFI7419GTGG/), [IGVFFI3981PZOM](/sequence-files/IGVFFI3981PZOM/) which lack specification of a `sequencing_kit`. Sequence files in a file set associated wtih bulk data should specify a sequencing kit.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_inconsistent_sequencing_kit",
                "path": "/measurement-sets/IGVFDS4670KYYZ/"
            },
            {
                "category": "missing sequence specification",
                "detail": "Measurement set [IGVFDS4670KYYZ](/measurement-sets/IGVFDS4670KYYZ/) has sequence file(s): [IGVFFI5515WMAP](/sequence-files/IGVFFI5515WMAP/), [IGVFFI5825CPPI](/sequence-files/IGVFFI5825CPPI/), [IGVFFI0891GHBS](/sequence-files/IGVFFI0891GHBS/), [IGVFFI9735KPOY](/sequence-files/IGVFFI9735KPOY/), [IGVFFI1930WYDB](/sequence-files/IGVFFI1930WYDB/), [IGVFFI0188PLMA](/sequence-files/IGVFFI0188PLMA/), [IGVFFI3697ELZW](/sequence-files/IGVFFI3697ELZW/), [IGVFFI7935LZEB](/sequence-files/IGVFFI7935LZEB/), [IGVFFI6473WCCA](/sequence-files/IGVFFI6473WCCA/), [IGVFFI1618NTXS](/sequence-files/IGVFFI1618NTXS/), [IGVFFI9241EJHI](/sequence-files/IGVFFI9241EJHI/), [IGVFFI6138BEDC](/sequence-files/IGVFFI6138BEDC/), [IGVFFI6090LUFD](/sequence-files/IGVFFI6090LUFD/), [IGVFFI9028MKBY](/sequence-files/IGVFFI9028MKBY/), [IGVFFI2324NATU](/sequence-files/IGVFFI2324NATU/), [IGVFFI1267WKCI](/sequence-files/IGVFFI1267WKCI/), [IGVFFI3701VQZK](/sequence-files/IGVFFI3701VQZK/), [IGVFFI2450MTRN](/sequence-files/IGVFFI2450MTRN/), [IGVFFI5480ZZJF](/sequence-files/IGVFFI5480ZZJF/), [IGVFFI8545WBNH](/sequence-files/IGVFFI8545WBNH/), [IGVFFI2596LZGM](/sequence-files/IGVFFI2596LZGM/), [IGVFFI1656FMUD](/sequence-files/IGVFFI1656FMUD/), [IGVFFI8417PWAV](/sequence-files/IGVFFI8417PWAV/), [IGVFFI0491YOPG](/sequence-files/IGVFFI0491YOPG/), [IGVFFI7548XQCE](/sequence-files/IGVFFI7548XQCE/), [IGVFFI7687UKFE](/sequence-files/IGVFFI7687UKFE/), [IGVFFI5870OEWI](/sequence-files/IGVFFI5870OEWI/), [IGVFFI6831GAHM](/sequence-files/IGVFFI6831GAHM/), [IGVFFI9171MTAP](/sequence-files/IGVFFI9171MTAP/), [IGVFFI4889NNJC](/sequence-files/IGVFFI4889NNJC/), [IGVFFI7390SQZF](/sequence-files/IGVFFI7390SQZF/), [IGVFFI9229UGYP](/sequence-files/IGVFFI9229UGYP/), [IGVFFI9998LGTM](/sequence-files/IGVFFI9998LGTM/), [IGVFFI8765NOHD](/sequence-files/IGVFFI8765NOHD/), [IGVFFI8426TADQ](/sequence-files/IGVFFI8426TADQ/), [IGVFFI0573DKSX](/sequence-files/IGVFFI0573DKSX/), [IGVFFI2481LCHM](/sequence-files/IGVFFI2481LCHM/), [IGVFFI1103JKJA](/sequence-files/IGVFFI1103JKJA/), [IGVFFI9562EIRT](/sequence-files/IGVFFI9562EIRT/), [IGVFFI2241UJGM](/sequence-files/IGVFFI2241UJGM/), [IGVFFI0557PYCK](/sequence-files/IGVFFI0557PYCK/), [IGVFFI6213HMWS](/sequence-files/IGVFFI6213HMWS/), [IGVFFI7475HSYH](/sequence-files/IGVFFI7475HSYH/), [IGVFFI6265FFWL](/sequence-files/IGVFFI6265FFWL/), [IGVFFI4755OYJJ](/sequence-files/IGVFFI4755OYJJ/), [IGVFFI4935LPFU](/sequence-files/IGVFFI4935LPFU/), [IGVFFI7419GTGG](/sequence-files/IGVFFI7419GTGG/), [IGVFFI3981PZOM](/sequence-files/IGVFFI3981PZOM/) which do not have any `seqspecs`. Sequence files in a file set associated with bulk data are expected to link to a sequence specification file.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_missing_seqspec",
                "path": "/measurement-sets/IGVFDS4670KYYZ/"
            },
            {
                "category": "mismatched status",
                "detail": "Released in vitro system [IGVFSM1664NEGX](/in-vitro-systems/IGVFSM1664NEGX/) has in progress subobject construct library set [IGVFDS2374NXLW](/construct-library-sets/IGVFDS2374NXLW/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/in-vitro-systems/IGVFSM1664NEGX/"
            },
            {
                "category": "missing publication",
                "detail": "In vitro system [IGVFSM1664NEGX](/in-vitro-systems/IGVFSM1664NEGX/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_sample_missing_publication",
                "path": "/in-vitro-systems/IGVFSM1664NEGX/"
            }
        ],
        "WARNING": [
            {
                "category": "missing auxiliary set",
                "detail": "Measurement set [IGVFDS4670KYYZ](/measurement-sets/IGVFDS4670KYYZ/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_missing_auxiliary_set",
                "path": "/measurement-sets/IGVFDS4670KYYZ/"
            }
        ]
    },
    "award": {
        "@id": "/awards/HG011972/",
        "component": "functional characterization",
        "contact_pi": {
            "@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
            "title": "Jesse Engreitz"
        },
        "title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
    },
    "construct_library_sets": [
        {
            "@id": "/construct-library-sets/IGVFDS2374NXLW/",
            "accession": "IGVFDS2374NXLW",
            "file_set_type": "guide library",
            "status": "in progress",
            "summary": "guide (sgRNA) library targeting sequence variants in a genomic locus"
        }
    ],
    "control_file_sets": [
        {
            "@id": "/measurement-sets/IGVFDS4989HPTW/",
            "accession": "IGVFDS4989HPTW",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-THP1-PE2_Exp1_NegControl_AmpliconSequencing"
            ],
            "status": "released"
        }
    ],
    "control_for": [],
    "creation_timestamp": "2023-11-30T22:49:26.775500+00:00",
    "donors": [
        {
            "@id": "/human-donors/IGVFDO7359LVPI/",
            "accession": "IGVFDO7359LVPI",
            "aliases": [
                "igvf:donor_of_THP1"
            ],
            "sex": "male",
            "status": "released",
            "taxa": "Homo sapiens"
        }
    ],
    "externally_hosted": false,
    "file_set_type": "experimental data",
    "files": [
        {
            "@id": "/sequence-files/IGVFFI5515WMAP/",
            "accession": "IGVFFI5515WMAP",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep2_I1"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:34:20.400595+00:00",
            "file_format": "fastq",
            "file_size": 875100,
            "href": "/sequence-files/IGVFFI5515WMAP/@@download/IGVFFI5515WMAP.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/d897e199-eb11-4dd2-a96b-d30ed394fcbc/IGVFFI5515WMAP.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep2_S260_I1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI5825CPPI/",
            "accession": "IGVFFI5825CPPI",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep8_I2"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:38:14.492281+00:00",
            "file_format": "fastq",
            "file_size": 824031,
            "href": "/sequence-files/IGVFFI5825CPPI/@@download/IGVFFI5825CPPI.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/b798b097-632d-48ae-972f-d574ad140209/IGVFFI5825CPPI.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep8_S356_I2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI0891GHBS/",
            "accession": "IGVFFI0891GHBS",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep2_R2"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:34:48.423302+00:00",
            "file_format": "fastq",
            "file_size": 3679164,
            "href": "/sequence-files/IGVFFI0891GHBS/@@download/IGVFFI0891GHBS.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/719a38f9-0e84-4458-b9a6-7caaa6fe5cd5/IGVFFI0891GHBS.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep2_S260_R2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI9735KPOY/",
            "accession": "IGVFFI9735KPOY",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep6_R1"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:37:06.297274+00:00",
            "file_format": "fastq",
            "file_size": 3224698,
            "href": "/sequence-files/IGVFFI9735KPOY/@@download/IGVFFI9735KPOY.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/32c40e32-495a-4cdb-bfd5-ef9388c13ada/IGVFFI9735KPOY.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep6_S264_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI1930WYDB/",
            "accession": "IGVFFI1930WYDB",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep3_R1"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:35:15.786805+00:00",
            "file_format": "fastq",
            "file_size": 3116764,
            "href": "/sequence-files/IGVFFI1930WYDB/@@download/IGVFFI1930WYDB.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/e6b96426-e99e-4645-be23-36ebe59c5a92/IGVFFI1930WYDB.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep3_S261_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI0188PLMA/",
            "accession": "IGVFFI0188PLMA",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep9_R2"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:39:09.010443+00:00",
            "file_format": "fastq",
            "file_size": 3608461,
            "href": "/sequence-files/IGVFFI0188PLMA/@@download/IGVFFI0188PLMA.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/39aa4eba-5a11-4f0f-9d65-529e3672171f/IGVFFI0188PLMA.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep9_S357_R2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI3697ELZW/",
            "accession": "IGVFFI3697ELZW",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep2_R1"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:34:38.654239+00:00",
            "file_format": "fastq",
            "file_size": 3093837,
            "href": "/sequence-files/IGVFFI3697ELZW/@@download/IGVFFI3697ELZW.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/0d09e228-9b37-480c-9f97-6ec3289b0b00/IGVFFI3697ELZW.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep2_S260_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI7935LZEB/",
            "accession": "IGVFFI7935LZEB",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep7_I1"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:37:24.544296+00:00",
            "file_format": "fastq",
            "file_size": 843049,
            "href": "/sequence-files/IGVFFI7935LZEB/@@download/IGVFFI7935LZEB.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/a763debe-d291-4aaf-b267-ff5a9e08dc9b/IGVFFI7935LZEB.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep7_S355_I1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI6473WCCA/",
            "accession": "IGVFFI6473WCCA",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep11_I1"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:33:06.383556+00:00",
            "file_format": "fastq",
            "file_size": 895137,
            "href": "/sequence-files/IGVFFI6473WCCA/@@download/IGVFFI6473WCCA.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/1f7ca5bd-a154-46bc-8c74-db443b8621a7/IGVFFI6473WCCA.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep11_S359_I1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI1618NTXS/",
            "accession": "IGVFFI1618NTXS",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep3_I1"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:34:57.501447+00:00",
            "file_format": "fastq",
            "file_size": 846138,
            "href": "/sequence-files/IGVFFI1618NTXS/@@download/IGVFFI1618NTXS.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/9fc3c97e-6a2a-45ee-9ae3-e7dd06cfd89d/IGVFFI1618NTXS.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep3_S261_I1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI9241EJHI/",
            "accession": "IGVFFI9241EJHI",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep8_R2"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:38:32.676482+00:00",
            "file_format": "fastq",
            "file_size": 3642602,
            "href": "/sequence-files/IGVFFI9241EJHI/@@download/IGVFFI9241EJHI.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/7bd6f5ac-ff2d-4272-9d65-5c025237d0bb/IGVFFI9241EJHI.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep8_S356_R2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI6138BEDC/",
            "accession": "IGVFFI6138BEDC",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep12_R1"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:34:01.729120+00:00",
            "file_format": "fastq",
            "file_size": 3130578,
            "href": "/sequence-files/IGVFFI6138BEDC/@@download/IGVFFI6138BEDC.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/42fedcda-9ad0-4a29-8796-93619b381019/IGVFFI6138BEDC.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep12_S360_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI6090LUFD/",
            "accession": "IGVFFI6090LUFD",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep10_R2"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:32:57.292275+00:00",
            "file_format": "fastq",
            "file_size": 3678301,
            "href": "/sequence-files/IGVFFI6090LUFD/@@download/IGVFFI6090LUFD.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/756af8c8-6722-45fe-883f-deed6f58c825/IGVFFI6090LUFD.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep10_S358_R2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI9028MKBY/",
            "accession": "IGVFFI9028MKBY",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep10_I1"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:32:29.525092+00:00",
            "file_format": "fastq",
            "file_size": 873296,
            "href": "/sequence-files/IGVFFI9028MKBY/@@download/IGVFFI9028MKBY.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/709fa670-9070-4c76-a402-664cdc3a26ec/IGVFFI9028MKBY.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep10_S358_I1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI2324NATU/",
            "accession": "IGVFFI2324NATU",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep6_I2"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:36:57.370524+00:00",
            "file_format": "fastq",
            "file_size": 865277,
            "href": "/sequence-files/IGVFFI2324NATU/@@download/IGVFFI2324NATU.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/6fcd91e7-cc60-45e3-b692-b638b6eb6612/IGVFFI2324NATU.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep6_S264_I2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI1267WKCI/",
            "accession": "IGVFFI1267WKCI",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep3_I2"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:35:06.410574+00:00",
            "file_format": "fastq",
            "file_size": 844600,
            "href": "/sequence-files/IGVFFI1267WKCI/@@download/IGVFFI1267WKCI.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/07b524a8-c1e6-4671-9b4f-4f4590b92c00/IGVFFI1267WKCI.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep3_S261_I2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI3701VQZK/",
            "accession": "IGVFFI3701VQZK",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep11_I2"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:33:15.444040+00:00",
            "file_format": "fastq",
            "file_size": 855478,
            "href": "/sequence-files/IGVFFI3701VQZK/@@download/IGVFFI3701VQZK.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/32ff62a3-289d-405f-a8f5-e496412b30e8/IGVFFI3701VQZK.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep11_S359_I2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI2450MTRN/",
            "accession": "IGVFFI2450MTRN",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep1_R2"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:32:20.355255+00:00",
            "file_format": "fastq",
            "file_size": 3741637,
            "href": "/sequence-files/IGVFFI2450MTRN/@@download/IGVFFI2450MTRN.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/5d72a96e-0ef9-4555-a675-cf7d6345ef16/IGVFFI2450MTRN.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep1_S259_R2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI5480ZZJF/",
            "accession": "IGVFFI5480ZZJF",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep10_R1"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:32:47.893707+00:00",
            "file_format": "fastq",
            "file_size": 3020812,
            "href": "/sequence-files/IGVFFI5480ZZJF/@@download/IGVFFI5480ZZJF.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/f65c3ea0-0416-44aa-a369-e4f39c6377f9/IGVFFI5480ZZJF.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep10_S358_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI8545WBNH/",
            "accession": "IGVFFI8545WBNH",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep9_I1"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:38:41.720092+00:00",
            "file_format": "fastq",
            "file_size": 794194,
            "href": "/sequence-files/IGVFFI8545WBNH/@@download/IGVFFI8545WBNH.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/1e1e349b-d1c5-4f7c-ac1f-8aaa7d723641/IGVFFI8545WBNH.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep9_S357_I1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI2596LZGM/",
            "accession": "IGVFFI2596LZGM",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep11_R2"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:33:34.041731+00:00",
            "file_format": "fastq",
            "file_size": 3815018,
            "href": "/sequence-files/IGVFFI2596LZGM/@@download/IGVFFI2596LZGM.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/aafa9740-eaad-4dfc-88a6-b92c4debef0e/IGVFFI2596LZGM.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep11_S359_R2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI1656FMUD/",
            "accession": "IGVFFI1656FMUD",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep4_I2"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:35:43.507001+00:00",
            "file_format": "fastq",
            "file_size": 855898,
            "href": "/sequence-files/IGVFFI1656FMUD/@@download/IGVFFI1656FMUD.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/b6dcfc8a-f587-4a6a-9d44-603b217d2813/IGVFFI1656FMUD.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep4_S262_I2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI8417PWAV/",
            "accession": "IGVFFI8417PWAV",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep4_R1"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:35:52.722244+00:00",
            "file_format": "fastq",
            "file_size": 3187970,
            "href": "/sequence-files/IGVFFI8417PWAV/@@download/IGVFFI8417PWAV.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/9709bbcd-2067-4999-9134-1fc353e29197/IGVFFI8417PWAV.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep4_S262_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI0491YOPG/",
            "accession": "IGVFFI0491YOPG",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep7_R1"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:37:42.920950+00:00",
            "file_format": "fastq",
            "file_size": 2985733,
            "href": "/sequence-files/IGVFFI0491YOPG/@@download/IGVFFI0491YOPG.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/4395a510-2f64-4808-b02b-20728273568c/IGVFFI0491YOPG.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep7_S355_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI7548XQCE/",
            "accession": "IGVFFI7548XQCE",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep12_R2"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:34:10.920011+00:00",
            "file_format": "fastq",
            "file_size": 3778837,
            "href": "/sequence-files/IGVFFI7548XQCE/@@download/IGVFFI7548XQCE.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/fbfa82b3-a388-4386-9b06-8acd0284c2b1/IGVFFI7548XQCE.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep12_S360_R2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI7687UKFE/",
            "accession": "IGVFFI7687UKFE",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep7_I2"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:37:33.567557+00:00",
            "file_format": "fastq",
            "file_size": 822359,
            "href": "/sequence-files/IGVFFI7687UKFE/@@download/IGVFFI7687UKFE.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/e15e5e3b-65ce-4789-b769-e8e298498b04/IGVFFI7687UKFE.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep7_S355_I2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI5870OEWI/",
            "accession": "IGVFFI5870OEWI",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep9_R1"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:38:59.923347+00:00",
            "file_format": "fastq",
            "file_size": 2952142,
            "href": "/sequence-files/IGVFFI5870OEWI/@@download/IGVFFI5870OEWI.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/95fac895-33d7-4212-8eb5-2ee66c5a5ac0/IGVFFI5870OEWI.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep9_S357_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI6831GAHM/",
            "accession": "IGVFFI6831GAHM",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep1_I1"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:31:52.730380+00:00",
            "file_format": "fastq",
            "file_size": 887611,
            "href": "/sequence-files/IGVFFI6831GAHM/@@download/IGVFFI6831GAHM.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/f7dd7ff6-84a7-41bc-b594-4c84bd003a06/IGVFFI6831GAHM.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep1_S259_I1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI9171MTAP/",
            "accession": "IGVFFI9171MTAP",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep11_R1"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:33:24.704532+00:00",
            "file_format": "fastq",
            "file_size": 3130231,
            "href": "/sequence-files/IGVFFI9171MTAP/@@download/IGVFFI9171MTAP.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/3f6b7e21-9cc5-4193-8726-627c0e918e57/IGVFFI9171MTAP.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep11_S359_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI4889NNJC/",
            "accession": "IGVFFI4889NNJC",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep5_I2"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:36:20.203649+00:00",
            "file_format": "fastq",
            "file_size": 868608,
            "href": "/sequence-files/IGVFFI4889NNJC/@@download/IGVFFI4889NNJC.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/0dbb3a5d-80f9-4d43-92f8-b8ac77681d89/IGVFFI4889NNJC.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep5_S263_I2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI7390SQZF/",
            "accession": "IGVFFI7390SQZF",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep3_R2"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:35:25.031771+00:00",
            "file_format": "fastq",
            "file_size": 3733991,
            "href": "/sequence-files/IGVFFI7390SQZF/@@download/IGVFFI7390SQZF.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/f2eda17a-6b21-41ad-9a1e-6bc39e5c05a1/IGVFFI7390SQZF.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep3_S261_R2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI9229UGYP/",
            "accession": "IGVFFI9229UGYP",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep5_R2"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:36:38.761280+00:00",
            "file_format": "fastq",
            "file_size": 3861566,
            "href": "/sequence-files/IGVFFI9229UGYP/@@download/IGVFFI9229UGYP.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/5afce1be-3984-4f6c-87df-184dde73aa61/IGVFFI9229UGYP.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep5_S263_R2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI9998LGTM/",
            "accession": "IGVFFI9998LGTM",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep9_I2"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:38:50.741420+00:00",
            "file_format": "fastq",
            "file_size": 808925,
            "href": "/sequence-files/IGVFFI9998LGTM/@@download/IGVFFI9998LGTM.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/08cac041-80d6-4d90-86e5-bff9e3341665/IGVFFI9998LGTM.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep9_S357_I2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI8765NOHD/",
            "accession": "IGVFFI8765NOHD",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep1_I2"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:32:02.092149+00:00",
            "file_format": "fastq",
            "file_size": 845451,
            "href": "/sequence-files/IGVFFI8765NOHD/@@download/IGVFFI8765NOHD.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/e6e9e4c4-4e7d-4842-9955-b23c0c7c4e72/IGVFFI8765NOHD.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep1_S259_I2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI8426TADQ/",
            "accession": "IGVFFI8426TADQ",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep5_I1"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:36:11.223197+00:00",
            "file_format": "fastq",
            "file_size": 930698,
            "href": "/sequence-files/IGVFFI8426TADQ/@@download/IGVFFI8426TADQ.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/563c70e3-19e9-4562-ba59-bd1565bd8492/IGVFFI8426TADQ.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep5_S263_I1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI0573DKSX/",
            "accession": "IGVFFI0573DKSX",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep8_R1"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:38:23.564178+00:00",
            "file_format": "fastq",
            "file_size": 3012839,
            "href": "/sequence-files/IGVFFI0573DKSX/@@download/IGVFFI0573DKSX.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/b6a19424-f956-4b69-98d8-2917f8b61ee1/IGVFFI0573DKSX.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep8_S356_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI2481LCHM/",
            "accession": "IGVFFI2481LCHM",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep4_R2"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:36:01.937214+00:00",
            "file_format": "fastq",
            "file_size": 3806516,
            "href": "/sequence-files/IGVFFI2481LCHM/@@download/IGVFFI2481LCHM.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/635b75e1-ce12-4d17-a51a-39ecbef9548d/IGVFFI2481LCHM.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep4_S262_R2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI1103JKJA/",
            "accession": "IGVFFI1103JKJA",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep1_R1"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:32:11.277683+00:00",
            "file_format": "fastq",
            "file_size": 3126983,
            "href": "/sequence-files/IGVFFI1103JKJA/@@download/IGVFFI1103JKJA.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/7a5d5806-fb24-46d3-8d89-f4a6d2377663/IGVFFI1103JKJA.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep1_S259_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI9562EIRT/",
            "accession": "IGVFFI9562EIRT",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep8_I1"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:38:01.546943+00:00",
            "file_format": "fastq",
            "file_size": 838263,
            "href": "/sequence-files/IGVFFI9562EIRT/@@download/IGVFFI9562EIRT.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/09ec6ad0-cdaa-4d33-9ff8-2ac51be5e25a/IGVFFI9562EIRT.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep8_S356_I1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI2241UJGM/",
            "accession": "IGVFFI2241UJGM",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep12_I2"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:33:52.582219+00:00",
            "file_format": "fastq",
            "file_size": 848851,
            "href": "/sequence-files/IGVFFI2241UJGM/@@download/IGVFFI2241UJGM.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/52115c62-a55e-4e78-9276-0e4c17cbe88a/IGVFFI2241UJGM.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep12_S360_I2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI0557PYCK/",
            "accession": "IGVFFI0557PYCK",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep6_R2"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:37:15.339672+00:00",
            "file_format": "fastq",
            "file_size": 3826182,
            "href": "/sequence-files/IGVFFI0557PYCK/@@download/IGVFFI0557PYCK.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/f8e81aca-3828-4280-9de7-f33a660b756e/IGVFFI0557PYCK.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep6_S264_R2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI6213HMWS/",
            "accession": "IGVFFI6213HMWS",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep4_I1"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:35:34.454776+00:00",
            "file_format": "fastq",
            "file_size": 939631,
            "href": "/sequence-files/IGVFFI6213HMWS/@@download/IGVFFI6213HMWS.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/c40a501f-a65f-4a5c-ad2c-909944742b99/IGVFFI6213HMWS.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep4_S262_I1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI7475HSYH/",
            "accession": "IGVFFI7475HSYH",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep12_I1"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:33:43.359449+00:00",
            "file_format": "fastq",
            "file_size": 831027,
            "href": "/sequence-files/IGVFFI7475HSYH/@@download/IGVFFI7475HSYH.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/dcd99ca3-d9ef-4628-8b06-2e163c4cf05d/IGVFFI7475HSYH.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep12_S360_I1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI6265FFWL/",
            "accession": "IGVFFI6265FFWL",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep5_R1"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:36:29.393264+00:00",
            "file_format": "fastq",
            "file_size": 3228744,
            "href": "/sequence-files/IGVFFI6265FFWL/@@download/IGVFFI6265FFWL.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/5d02ba95-9d17-42fc-8c25-4d2a0ae9d665/IGVFFI6265FFWL.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep5_S263_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI4755OYJJ/",
            "accession": "IGVFFI4755OYJJ",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep6_I1"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:36:48.119429+00:00",
            "file_format": "fastq",
            "file_size": 859289,
            "href": "/sequence-files/IGVFFI4755OYJJ/@@download/IGVFFI4755OYJJ.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/750f8ae8-8864-4960-813c-0180a2571342/IGVFFI4755OYJJ.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep6_S264_I1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI4935LPFU/",
            "accession": "IGVFFI4935LPFU",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep10_I2"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:32:38.687479+00:00",
            "file_format": "fastq",
            "file_size": 824038,
            "href": "/sequence-files/IGVFFI4935LPFU/@@download/IGVFFI4935LPFU.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/217170e1-37db-491a-8203-fd12dc893008/IGVFFI4935LPFU.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep10_S358_I2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI7419GTGG/",
            "accession": "IGVFFI7419GTGG",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep7_R2"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:37:52.238319+00:00",
            "file_format": "fastq",
            "file_size": 3640354,
            "href": "/sequence-files/IGVFFI7419GTGG/@@download/IGVFFI7419GTGG.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/bd3fc1aa-bb48-4825-a523-5c045e343f8a/IGVFFI7419GTGG.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep7_S355_R2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI3981PZOM/",
            "accession": "IGVFFI3981PZOM",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep2_I2"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-05T23:34:29.528543+00:00",
            "file_format": "fastq",
            "file_size": 834792,
            "href": "/sequence-files/IGVFFI3981PZOM/@@download/IGVFFI3981PZOM.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/05/745a90ec-d365-4b4a-9585-982c25c62409/IGVFFI3981PZOM.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008566/",
                "status": "released",
                "term_name": "Illumina NextSeq 550"
            },
            "status": "released",
            "submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB-PCRrep2_S260_I2_001.fastq.gz",
            "upload_status": "validated"
        }
    ],
    "input_for": [
        "/analysis-sets/IGVFDS5031MNRR/"
    ],
    "lab": {
        "@id": "/labs/jesse-engreitz/",
        "title": "Jesse Engreitz, Stanford"
    },
    "notes": "The readout 2e41e624-f6c7-4f0c-a07e-bc36cefdca39 was removed from this measurement set. This measurement set previously used Variant FlowFISH as a preferred_assay_title, but this enum is now removed. So it has been defaulted to Variant-EFFECTS.",
    "preferred_assay_title": "Variant-EFFECTS",
    "protocols": [
        "https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1"
    ],
    "release_timestamp": "2023-12-20T23:05:53.289257+00:00",
    "samples": [
        {
            "@id": "/in-vitro-systems/IGVFSM1664NEGX/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM1664NEGX",
            "aliases": [
                "jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-BinB"
            ],
            "classifications": [
                "cell line"
            ],
            "institutional_certificates": [],
            "modifications": [
                {
                    "@id": "/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/",
                    "modality": "prime editing",
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0001253/",
                    "@type": [
                        "SampleTerm",
                        "OntologyTerm",
                        "Item"
                    ],
                    "aliases": [
                        "igvf:THP-1"
                    ],
                    "status": "released",
                    "summary": "THP-1",
                    "term_name": "THP-1"
                }
            ],
            "status": "released",
            "summary": "Homo sapiens (male) THP-1 cell line (sorting details: FACS bin for 26-50% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transduced (lentivirus) with a guide library",
            "taxa": "Homo sapiens"
        }
    ],
    "schema_version": "26",
    "status": "released",
    "submitted_by": {
        "@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
        "title": "Michael Montgomery"
    },
    "submitted_files_timestamp": "2023-12-05T23:31:52.730380+00:00",
    "summary": "CRISPR prime editing Variant-EFFECTS sorted on the expression of PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus",
    "targeted_genes": [
        {
            "@id": "/genes/ENSG00000108179/",
            "geneid": "ENSG00000108179",
            "name": "peptidylprolyl isomerase F",
            "status": "released",
            "symbol": "PPIF",
            "synonyms": [
                "PPIase F",
                "peptidylprolyl isomerase F",
                "Cyp-D",
                "peptidyl-prolyl cis-trans isomerase F, mitochondrial",
                "PPIF",
                "CyP-M",
                "cyclophilin F",
                "peptidyl-prolyl cis-trans isomerase, mitochondrial",
                "cyclophilin 3",
                "cyclophilin D",
                "rotamase F",
                "mitochondrial cyclophilin",
                "CypD",
                "CYP3"
            ]
        }
    ],
    "uuid": "2b400e92-5e5d-4f84-8476-a368204bbc60"
}