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INDEXED
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MeasurementSet
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IGVFDS4653HFNR
IGVFDS4653HFNR
released
Json view
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 434)
Protocols
https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw
Aliases
buenrostro-bernstein:scATAC Lib 1268
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
10 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0596FTXK
fastq
reads
R1
5371
Read 1
IGVFFI5344RQUC
Illumina NovaSeq 6000
22KHF5LT3
7.3 GB
Jason Buenrostro, Broad
validated
IGVFFI3820FJEW
fastq
reads
R2
5366
Read 2, Barcode index
IGVFFI4509WYHB
Illumina NovaSeq 6000
22KHF5LT3
11 GB
Jason Buenrostro, Broad
validated
IGVFFI3934VSKO
fastq
reads
R1
7334
Read 1
IGVFFI9001SPLR
Illumina NovaSeq 6000
22KFF5LT3
8.9 GB
Jason Buenrostro, Broad
validated
IGVFFI4472GWMH
fastq
reads
R1
5366
Read 1
IGVFFI4509WYHB
Illumina NovaSeq 6000
22KHF5LT3
7.3 GB
Jason Buenrostro, Broad
validated
IGVFFI6211UCEG
fastq
reads
R2
5361
Read 2, Barcode index
IGVFFI3216RCJI
Illumina NovaSeq 6000
22KHF5LT3
10 GB
Jason Buenrostro, Broad
validated
IGVFFI7053KGZB
fastq
reads
R2
5371
Read 2, Barcode index
IGVFFI5344RQUC
Illumina NovaSeq 6000
22KHF5LT3
11 GB
Jason Buenrostro, Broad
validated
IGVFFI7241APOI
fastq
reads
R2
7339
Read 2, Barcode index
IGVFFI1332WZRQ
Illumina NovaSeq 6000
22KFF5LT3
13 GB
Jason Buenrostro, Broad
validated
IGVFFI7510AQCA
fastq
reads
R1
7339
Read 1
IGVFFI1332WZRQ
Illumina NovaSeq 6000
22KFF5LT3
8.9 GB
Jason Buenrostro, Broad
validated
IGVFFI9203FDKY
fastq
reads
R2
7334
Read 2, Barcode index
IGVFFI9001SPLR
Illumina NovaSeq 6000
22KFF5LT3
13 GB
Jason Buenrostro, Broad
validated
IGVFFI9683RWGO
fastq
reads
R1
5361
Read 1
IGVFFI3216RCJI
Illumina NovaSeq 6000
22KHF5LT3
7.2 GB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM2881UHTO
Tissue
brain
Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 434)
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO9446AKYF
buenrostro-bernstein:Donor 2047
unspecified
Mus musculus
Related Multiome Datasets
4 items
Accession
Type
Summary
Aliases
Lab
IGVFDS1816FCQL
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:scRNA Lib 596
Jason Buenrostro, Broad
IGVFDS7938OXSK
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:scRNA Lib 609
Jason Buenrostro, Broad
IGVFDS8623UWKX
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:scRNA Lib 598
Jason Buenrostro, Broad
IGVFDS9866LFTQ
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:scRNA Lib 597
Jason Buenrostro, Broad