IGVFDS4642GQLX

released
{
    "@context": "/terms/",
    "@id": "/measurement-sets/IGVFDS4642GQLX/",
    "@type": [
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        "FileSet",
        "Item"
    ],
    "accession": "IGVFDS4642GQLX",
    "aliases": [
        "buenrostro-bernstein:scATAC Lib 547"
    ],
    "assay_term": {
        "@id": "/assay-terms/OBI_0002764/",
        "assay_slims": [
            "chromatin accessibility"
        ],
        "status": "released",
        "term_name": "single-cell ATAC-seq"
    },
    "audit": {
        "INTERNAL_ACTION": [
            {
                "category": "missing publication",
                "detail": "In vitro system [IGVFSM0636UWGR](/in-vitro-systems/IGVFSM0636UWGR/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_sample_missing_publication",
                "path": "/in-vitro-systems/IGVFSM0636UWGR/"
            },
            {
                "category": "missing publication",
                "detail": "Measurement set [IGVFDS4642GQLX](/measurement-sets/IGVFDS4642GQLX/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_file_set_missing_publication",
                "path": "/measurement-sets/IGVFDS4642GQLX/"
            },
            {
                "category": "mismatched status",
                "detail": "Released measurement set [IGVFDS4642GQLX](/measurement-sets/IGVFDS4642GQLX/) has in progress subobject tabular file [IGVFFI0400MBIM](/tabular-files/IGVFFI0400MBIM/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/measurement-sets/IGVFDS4642GQLX/"
            },
            {
                "category": "mismatched status",
                "detail": "Released measurement set [IGVFDS4642GQLX](/measurement-sets/IGVFDS4642GQLX/) has in progress subobject tabular file [IGVFFI1310BRDS](/tabular-files/IGVFFI1310BRDS/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/measurement-sets/IGVFDS4642GQLX/"
            }
        ],
        "NOT_COMPLIANT": [
            {
                "category": "missing strand specificity",
                "detail": "Measurement set [IGVFDS4642GQLX](/measurement-sets/IGVFDS4642GQLX/) is missing required `strand_specificity`. Single-cell assays are expected to specify strand specificity.",
                "level": 50,
                "level_name": "NOT_COMPLIANT",
                "name": "audit_missing_strand_specificity",
                "path": "/measurement-sets/IGVFDS4642GQLX/"
            }
        ]
    },
    "award": {
        "@id": "/awards/HG011986/",
        "component": "mapping",
        "contact_pi": {
            "@id": "/users/33c6eb70-e143-4f77-9661-4b3905737daa/",
            "title": "Jason Buenrostro"
        },
        "title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
    },
    "control_for": [],
    "controlled_access": true,
    "creation_timestamp": "2024-08-20T15:01:04.773797+00:00",
    "data_use_limitation_summaries": [
        "GRU"
    ],
    "donors": [
        {
            "@id": "/human-donors/IGVFDO1064GZAS/",
            "accession": "IGVFDO1064GZAS",
            "aliases": [
                "buenrostro-bernstein:Donor 1982"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO7384GLJG/",
            "accession": "IGVFDO7384GLJG",
            "aliases": [
                "buenrostro-bernstein:Donor 1985"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO9942ECYN/",
            "accession": "IGVFDO9942ECYN",
            "aliases": [
                "buenrostro-bernstein:Donor 1742"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO3633ISAY/",
            "accession": "IGVFDO3633ISAY",
            "aliases": [
                "buenrostro-bernstein:Donor 1915"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO4092SMML/",
            "accession": "IGVFDO4092SMML",
            "aliases": [
                "buenrostro-bernstein:Donor 1941"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO9907ZZVD/",
            "accession": "IGVFDO9907ZZVD",
            "aliases": [
                "buenrostro-bernstein:Donor 1902"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO8663MIYC/",
            "accession": "IGVFDO8663MIYC",
            "aliases": [
                "buenrostro-bernstein:Donor 1925"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO0436YOXD/",
            "accession": "IGVFDO0436YOXD",
            "aliases": [
                "buenrostro-bernstein:Donor 1745"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO4983SZXB/",
            "accession": "IGVFDO4983SZXB",
            "aliases": [
                "buenrostro-bernstein:Donor 1988"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO5566VPJU/",
            "accession": "IGVFDO5566VPJU",
            "aliases": [
                "buenrostro-bernstein:Donor 1908"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO8979DYIF/",
            "accession": "IGVFDO8979DYIF",
            "aliases": [
                "buenrostro-bernstein:Donor 1743"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO8033HKMP/",
            "accession": "IGVFDO8033HKMP",
            "aliases": [
                "buenrostro-bernstein:Donor 1947"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO7506JTFC/",
            "accession": "IGVFDO7506JTFC",
            "aliases": [
                "buenrostro-bernstein:Donor 1931"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO4449DKJZ/",
            "accession": "IGVFDO4449DKJZ",
            "aliases": [
                "buenrostro-bernstein:Donor 1919"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO8459PAOB/",
            "accession": "IGVFDO8459PAOB",
            "aliases": [
                "buenrostro-bernstein:Donor 1953"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO4747GRSS/",
            "accession": "IGVFDO4747GRSS",
            "aliases": [
                "buenrostro-bernstein:Donor 1910"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO1363RREJ/",
            "accession": "IGVFDO1363RREJ",
            "aliases": [
                "buenrostro-bernstein:Donor 1939"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO6064BKKJ/",
            "accession": "IGVFDO6064BKKJ",
            "aliases": [
                "buenrostro-bernstein:Donor 1980"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO3006ZNMC/",
            "accession": "IGVFDO3006ZNMC",
            "aliases": [
                "buenrostro-bernstein:Donor 1928"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO0980QZSD/",
            "accession": "IGVFDO0980QZSD",
            "aliases": [
                "buenrostro-bernstein:Donor 1946"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO2893BVNI/",
            "accession": "IGVFDO2893BVNI",
            "aliases": [
                "buenrostro-bernstein:Donor 1942"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO2217VSIY/",
            "accession": "IGVFDO2217VSIY",
            "aliases": [
                "buenrostro-bernstein:Donor 1955"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO9164SEDG/",
            "accession": "IGVFDO9164SEDG",
            "aliases": [
                "buenrostro-bernstein:Donor 1911"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO4923LWHA/",
            "accession": "IGVFDO4923LWHA",
            "aliases": [
                "buenrostro-bernstein:Donor 1957"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO5885PQJM/",
            "accession": "IGVFDO5885PQJM",
            "aliases": [
                "buenrostro-bernstein:Donor 1658"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO7018SAYO/",
            "accession": "IGVFDO7018SAYO",
            "aliases": [
                "buenrostro-bernstein:Donor 1903"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO5669IKNL/",
            "accession": "IGVFDO5669IKNL",
            "aliases": [
                "buenrostro-bernstein:Donor 1950"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO9261YIGN/",
            "accession": "IGVFDO9261YIGN",
            "aliases": [
                "buenrostro-bernstein:Donor 1930"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO3881ZKMA/",
            "accession": "IGVFDO3881ZKMA",
            "aliases": [
                "buenrostro-bernstein:Donor 1984"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO3115AJIV/",
            "accession": "IGVFDO3115AJIV",
            "aliases": [
                "buenrostro-bernstein:Donor 1983"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO8195QBTP/",
            "accession": "IGVFDO8195QBTP",
            "aliases": [
                "buenrostro-bernstein:Donor 1958"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO8042WODZ/",
            "accession": "IGVFDO8042WODZ",
            "aliases": [
                "buenrostro-bernstein:Donor 1944"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO5869XCBR/",
            "accession": "IGVFDO5869XCBR",
            "aliases": [
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            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO0211CZWE/",
            "accession": "IGVFDO0211CZWE",
            "aliases": [
                "buenrostro-bernstein:Donor 1909"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO9115TZAP/",
            "accession": "IGVFDO9115TZAP",
            "aliases": [
                "buenrostro-bernstein:Donor 1766"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO4974JBDF/",
            "accession": "IGVFDO4974JBDF",
            "aliases": [
                "buenrostro-bernstein:Donor 1906"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO1255IJEH/",
            "accession": "IGVFDO1255IJEH",
            "aliases": [
                "buenrostro-bernstein:Donor 1975"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO9770WYQG/",
            "accession": "IGVFDO9770WYQG",
            "aliases": [
                "buenrostro-bernstein:Donor 1966"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO1417AZJE/",
            "accession": "IGVFDO1417AZJE",
            "aliases": [
                "buenrostro-bernstein:Donor 1986"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO9561MSAD/",
            "accession": "IGVFDO9561MSAD",
            "aliases": [
                "buenrostro-bernstein:Donor 1976"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO2674JORG/",
            "accession": "IGVFDO2674JORG",
            "aliases": [
                "buenrostro-bernstein:Donor 1782"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO1279HYUU/",
            "accession": "IGVFDO1279HYUU",
            "aliases": [
                "buenrostro-bernstein:Donor 1924"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO9063CMXP/",
            "accession": "IGVFDO9063CMXP",
            "aliases": [
                "buenrostro-bernstein:Donor 1979"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO9079MLOT/",
            "accession": "IGVFDO9079MLOT",
            "aliases": [
                "buenrostro-bernstein:Donor 1933"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO1533MKVB/",
            "accession": "IGVFDO1533MKVB",
            "aliases": [
                "buenrostro-bernstein:Donor 1739"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO2166LUJJ/",
            "accession": "IGVFDO2166LUJJ",
            "aliases": [
                "buenrostro-bernstein:Donor 1934"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO2649JQXX/",
            "accession": "IGVFDO2649JQXX",
            "aliases": [
                "buenrostro-bernstein:Donor 1659"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO6331OQFD/",
            "accession": "IGVFDO6331OQFD",
            "aliases": [
                "buenrostro-bernstein:Donor 1920"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO2588YUMG/",
            "accession": "IGVFDO2588YUMG",
            "aliases": [
                "buenrostro-bernstein:Donor 1905"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO2811ZFFP/",
            "accession": "IGVFDO2811ZFFP",
            "aliases": [
                "buenrostro-bernstein:Donor 1913"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO9835EEAJ/",
            "accession": "IGVFDO9835EEAJ",
            "aliases": [
                "buenrostro-bernstein:Donor 1951"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO2318JQUM/",
            "accession": "IGVFDO2318JQUM",
            "aliases": [
                "buenrostro-bernstein:Donor 1791"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO8124AYVF/",
            "accession": "IGVFDO8124AYVF",
            "aliases": [
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            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO4761JIBM/",
            "accession": "IGVFDO4761JIBM",
            "aliases": [
                "buenrostro-bernstein:Donor 1960"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO5859XGBW/",
            "accession": "IGVFDO5859XGBW",
            "aliases": [
                "buenrostro-bernstein:Donor 1971"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO2605TXDO/",
            "accession": "IGVFDO2605TXDO",
            "aliases": [
                "buenrostro-bernstein:Donor 1787"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO4283QEWA/",
            "accession": "IGVFDO4283QEWA",
            "aliases": [
                "buenrostro-bernstein:Donor 1974"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO2540COFN/",
            "accession": "IGVFDO2540COFN",
            "aliases": [
                "buenrostro-bernstein:Donor 1912"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO8776OLQD/",
            "accession": "IGVFDO8776OLQD",
            "aliases": [
                "buenrostro-bernstein:Donor 1744"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO6075RUJJ/",
            "accession": "IGVFDO6075RUJJ",
            "aliases": [
                "buenrostro-bernstein:Donor 1935"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO3385RWXZ/",
            "accession": "IGVFDO3385RWXZ",
            "aliases": [
                "buenrostro-bernstein:Donor 1780"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO5920NCRK/",
            "accession": "IGVFDO5920NCRK",
            "aliases": [
                "buenrostro-bernstein:Donor 1973"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO3560WDAC/",
            "accession": "IGVFDO3560WDAC",
            "aliases": [
                "buenrostro-bernstein:Donor 1940"
            ],
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
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        "title": "Siddarth Wekhande"
    },
    "submitted_files_timestamp": "2024-08-20T15:25:33.597148+00:00",
    "summary": "single-cell ATAC-seq (SHARE-seq)",
    "uuid": "535cbe35-ddd9-4d64-803a-34dba2ed16d2"
}