{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS4637BCMX",
"aliases": [
"bradley-bernstein:scRNA Lib 48",
"buenrostro-bernstein:scRNA Lib 48"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002631/",
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
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"INTERNAL_ACTION": [
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS4637BCMX](/measurement-sets/IGVFDS4637BCMX/) has sequence file(s): [IGVFFI9196XGDV](/sequence-files/IGVFFI9196XGDV/), [IGVFFI4941VCHA](/sequence-files/IGVFFI4941VCHA/), [IGVFFI4895BYIQ](/sequence-files/IGVFFI4895BYIQ/), [IGVFFI9224JUNR](/sequence-files/IGVFFI9224JUNR/), [IGVFFI9261DAXC](/sequence-files/IGVFFI9261DAXC/), [IGVFFI5534FBTF](/sequence-files/IGVFFI5534FBTF/), [IGVFFI5167HDGI](/sequence-files/IGVFFI5167HDGI/), [IGVFFI6363BLJJ](/sequence-files/IGVFFI6363BLJJ/), [IGVFFI2816MQLO](/sequence-files/IGVFFI2816MQLO/), [IGVFFI4574OQLX](/sequence-files/IGVFFI4574OQLX/), [IGVFFI4298CYFI](/sequence-files/IGVFFI4298CYFI/), [IGVFFI9575ALMT](/sequence-files/IGVFFI9575ALMT/), [IGVFFI3334NGOI](/sequence-files/IGVFFI3334NGOI/), [IGVFFI2628VAIT](/sequence-files/IGVFFI2628VAIT/), [IGVFFI1343TKHU](/sequence-files/IGVFFI1343TKHU/), [IGVFFI8379PYBJ](/sequence-files/IGVFFI8379PYBJ/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS4637BCMX/"
},
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM4912FPBQ](/primary-cells/IGVFSM4912FPBQ/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM4912FPBQ/"
}
],
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{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS4637BCMX](/measurement-sets/IGVFDS4637BCMX/) has an `assay_term` of single-cell RNA sequencing assay but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
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"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS4637BCMX/"
}
]
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"title": "Jason Buenrostro"
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"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
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],
"accession": "IGVFSM4912FPBQ",
"aliases": [
"bradley-bernstein:BioSam 4568_SS-PKR 8",
"buenrostro-bernstein:BioSam 4568_SS-PKR 8"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 8), male, Homo sapiens (37 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:47:35.179701+00:00",
"summary": "single-cell RNA sequencing assay (SHARE-seq)",
"uuid": "187d36fb-a2dd-4380-8639-270c7b3565d3"
}