IGVFDS4628XHJR

{
    "@context": "/terms/",
    "@id": "/measurement-sets/IGVFDS4628XHJR/",
    "@type": [
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    ],
    "accession": "IGVFDS4628XHJR",
    "aliases": [
        "igvf:corces_measurementSet_RP030_G7_ATAC"
    ],
    "assay_term": {
        "@id": "/assay-terms/OBI_0002762/",
        "assay_slims": [
            "chromatin accessibility"
        ],
        "status": "released",
        "term_name": "single-nucleus ATAC-seq"
    },
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            {
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            {
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                "detail": "Preview human donor [IGVFDO5410JIJT](/human-donors/IGVFDO5410JIJT/) has in progress subobject phenotypic feature [8571b362-6133-4f95-8a7d-3f8eadd9f3e7](/phenotypic-features/8571b362-6133-4f95-8a7d-3f8eadd9f3e7/).",
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            {
                "category": "mismatched status",
                "detail": "Preview human donor [IGVFDO1278CNID](/human-donors/IGVFDO1278CNID/) has in progress subobject phenotypic feature [e40b23ca-8049-458d-9daa-2d9a7bfe205d](/phenotypic-features/e40b23ca-8049-458d-9daa-2d9a7bfe205d/).",
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            {
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                "detail": "Preview human donor [IGVFDO1278CNID](/human-donors/IGVFDO1278CNID/) has in progress subobject phenotypic feature [0ffc3098-10e0-4829-bbfd-b484f751c849](/phenotypic-features/0ffc3098-10e0-4829-bbfd-b484f751c849/).",
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            {
                "category": "mismatched status",
                "detail": "Preview human donor [IGVFDO4108VCBA](/human-donors/IGVFDO4108VCBA/) has in progress subobject phenotypic feature [aff60c46-5191-4203-ac06-8623d7e676fa](/phenotypic-features/aff60c46-5191-4203-ac06-8623d7e676fa/).",
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            {
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                "detail": "Preview human donor [IGVFDO4108VCBA](/human-donors/IGVFDO4108VCBA/) has in progress subobject phenotypic feature [7a3d9384-554b-480b-b1f3-41a99dd54465](/phenotypic-features/7a3d9384-554b-480b-b1f3-41a99dd54465/).",
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            },
            {
                "category": "mismatched status",
                "detail": "Preview human donor [IGVFDO4108VCBA](/human-donors/IGVFDO4108VCBA/) has in progress subobject phenotypic feature [f32d310f-3150-421e-9656-a5fbaf04eebd](/phenotypic-features/f32d310f-3150-421e-9656-a5fbaf04eebd/).",
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            {
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                "detail": "Preview human donor [IGVFDO4108VCBA](/human-donors/IGVFDO4108VCBA/) has in progress subobject phenotypic feature [d2909f2d-5e28-4e1f-859d-c562f1c883af](/phenotypic-features/d2909f2d-5e28-4e1f-859d-c562f1c883af/).",
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            {
                "category": "mismatched status",
                "detail": "Preview human donor [IGVFDO4108VCBA](/human-donors/IGVFDO4108VCBA/) has in progress subobject phenotypic feature [956b5474-2acd-4c13-bbc1-dd81dba0622a](/phenotypic-features/956b5474-2acd-4c13-bbc1-dd81dba0622a/).",
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            {
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                "detail": "Preview human donor [IGVFDO4108VCBA](/human-donors/IGVFDO4108VCBA/) has in progress subobject phenotypic feature [1bb96444-071d-4a8d-81ef-b6567ef83275](/phenotypic-features/1bb96444-071d-4a8d-81ef-b6567ef83275/).",
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            {
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                "detail": "Preview human donor [IGVFDO6316TGCK](/human-donors/IGVFDO6316TGCK/) has in progress subobject phenotypic feature [ede77913-c99e-4e14-90ec-baf07e24b231](/phenotypic-features/ede77913-c99e-4e14-90ec-baf07e24b231/).",
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            {
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            {
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                "detail": "Preview human donor [IGVFDO6316TGCK](/human-donors/IGVFDO6316TGCK/) has in progress subobject phenotypic feature [d3b01418-90c3-49c1-a68a-c78b0c579754](/phenotypic-features/d3b01418-90c3-49c1-a68a-c78b0c579754/).",
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            },
            {
                "category": "mismatched status",
                "detail": "Preview human donor [IGVFDO6316TGCK](/human-donors/IGVFDO6316TGCK/) has in progress subobject phenotypic feature [36f110b3-ce3c-4adb-acea-eaf2033ddc62](/phenotypic-features/36f110b3-ce3c-4adb-acea-eaf2033ddc62/).",
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            {
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                "detail": "Preview human donor [IGVFDO6316TGCK](/human-donors/IGVFDO6316TGCK/) has in progress subobject phenotypic feature [f12ecc3c-67f0-4fce-8b6e-de7acb654b51](/phenotypic-features/f12ecc3c-67f0-4fce-8b6e-de7acb654b51/).",
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            {
                "category": "mismatched status",
                "detail": "Preview human donor [IGVFDO6316TGCK](/human-donors/IGVFDO6316TGCK/) has in progress subobject phenotypic feature [f6f8a961-ff33-42a3-89a3-44c3f09fe474](/phenotypic-features/f6f8a961-ff33-42a3-89a3-44c3f09fe474/).",
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            {
                "category": "mismatched status",
                "detail": "Preview human donor [IGVFDO0966KXTA](/human-donors/IGVFDO0966KXTA/) has in progress subobject phenotypic feature [ae18045e-aea2-45bb-b765-de3f2b965b59](/phenotypic-features/ae18045e-aea2-45bb-b765-de3f2b965b59/).",
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                "name": "audit_item_status",
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            },
            {
                "category": "mismatched status",
                "detail": "Preview human donor [IGVFDO0966KXTA](/human-donors/IGVFDO0966KXTA/) has in progress subobject phenotypic feature [6a401974-b8df-482a-b734-fab7683a6f39](/phenotypic-features/6a401974-b8df-482a-b734-fab7683a6f39/).",
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                "name": "audit_item_status",
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            },
            {
                "category": "mismatched status",
                "detail": "Preview human donor [IGVFDO0966KXTA](/human-donors/IGVFDO0966KXTA/) has in progress subobject phenotypic feature [d72f23fa-592d-4693-ab03-1160f89e3d5b](/phenotypic-features/d72f23fa-592d-4693-ab03-1160f89e3d5b/).",
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                "name": "audit_item_status",
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            },
            {
                "category": "mismatched status",
                "detail": "Preview human donor [IGVFDO0966KXTA](/human-donors/IGVFDO0966KXTA/) has in progress subobject phenotypic feature [a5b8945b-e2c3-49f2-96d9-e9c91bd1fe1c](/phenotypic-features/a5b8945b-e2c3-49f2-96d9-e9c91bd1fe1c/).",
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                "name": "audit_item_status",
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            {
                "category": "mismatched status",
                "detail": "Preview human donor [IGVFDO5718REZU](/human-donors/IGVFDO5718REZU/) has in progress subobject phenotypic feature [0d8d534e-543f-42ff-9e5a-b3ef73cb374e](/phenotypic-features/0d8d534e-543f-42ff-9e5a-b3ef73cb374e/).",
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                "name": "audit_item_status",
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            },
            {
                "category": "mismatched status",
                "detail": "Preview human donor [IGVFDO5718REZU](/human-donors/IGVFDO5718REZU/) has in progress subobject phenotypic feature [7809d834-676b-4003-8074-ec22a40aa6a8](/phenotypic-features/7809d834-676b-4003-8074-ec22a40aa6a8/).",
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                "name": "audit_item_status",
                "path": "/human-donors/IGVFDO5718REZU/"
            },
            {
                "category": "mismatched status",
                "detail": "Preview human donor [IGVFDO5718REZU](/human-donors/IGVFDO5718REZU/) has in progress subobject phenotypic feature [b93fee50-2e7c-4280-9708-3c14650d346f](/phenotypic-features/b93fee50-2e7c-4280-9708-3c14650d346f/).",
                "level": 30,
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                "name": "audit_item_status",
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            },
            {
                "category": "mismatched status",
                "detail": "Preview human donor [IGVFDO5718REZU](/human-donors/IGVFDO5718REZU/) has in progress subobject phenotypic feature [a4fdeb6a-be72-4729-b209-3c4d729d2080](/phenotypic-features/a4fdeb6a-be72-4729-b209-3c4d729d2080/).",
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        ],
        "NOT_COMPLIANT": [
            {
                "category": "missing sequence specification",
                "detail": "Measurement set [IGVFDS4628XHJR](/measurement-sets/IGVFDS4628XHJR/) has sequence file(s): [IGVFFI7862XYYW](/sequence-files/IGVFFI7862XYYW/), [IGVFFI6147ESZG](/sequence-files/IGVFFI6147ESZG/), [IGVFFI7937QKML](/sequence-files/IGVFFI7937QKML/), [IGVFFI6671JHZR](/sequence-files/IGVFFI6671JHZR/), [IGVFFI7314QYFF](/sequence-files/IGVFFI7314QYFF/), [IGVFFI3194XPIJ](/sequence-files/IGVFFI3194XPIJ/), [IGVFFI2818PORE](/sequence-files/IGVFFI2818PORE/), [IGVFFI3008MCRL](/sequence-files/IGVFFI3008MCRL/), [IGVFFI3543TTTX](/sequence-files/IGVFFI3543TTTX/), [IGVFFI4486CIXC](/sequence-files/IGVFFI4486CIXC/), [IGVFFI9174UMBG](/sequence-files/IGVFFI9174UMBG/), [IGVFFI6933RVDK](/sequence-files/IGVFFI6933RVDK/), [IGVFFI0824UJIN](/sequence-files/IGVFFI0824UJIN/), [IGVFFI6480RPFK](/sequence-files/IGVFFI6480RPFK/), [IGVFFI2408NCUK](/sequence-files/IGVFFI2408NCUK/), [IGVFFI5043NOGA](/sequence-files/IGVFFI5043NOGA/) which do not have any `seqspecs`. Sequence files in a file set associated with single cell data are expected to link to a sequence specification file.",
                "level": 50,
                "level_name": "NOT_COMPLIANT",
                "name": "audit_missing_seqspec",
                "path": "/measurement-sets/IGVFDS4628XHJR/"
            },
            {
                "category": "missing strand specificity",
                "detail": "Measurement set [IGVFDS4628XHJR](/measurement-sets/IGVFDS4628XHJR/) is missing required `strand_specificity`. Single-cell assays are expected to specify strand specificity.",
                "level": 50,
                "level_name": "NOT_COMPLIANT",
                "name": "audit_missing_strand_specificity",
                "path": "/measurement-sets/IGVFDS4628XHJR/"
            }
        ],
        "WARNING": [
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                "category": "missing analysis",
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                    "@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
                    "certificate_identifier": "IP115-05",
                    "controlled_access": false,
                    "status": "in progress"
                }
            ],
            "modifications": [],
            "sample_terms": [
                {
                    "@id": "/sample-terms/UBERON_0001874/",
                    "@type": [
                        "SampleTerm",
                        "OntologyTerm",
                        "Item"
                    ],
                    "status": "preview",
                    "summary": "putamen",
                    "term_name": "putamen"
                },
                {
                    "@id": "/sample-terms/UBERON_0002038/",
                    "@type": [
                        "SampleTerm",
                        "OntologyTerm",
                        "Item"
                    ],
                    "status": "preview",
                    "summary": "substantia nigra",
                    "term_name": "substantia nigra"
                },
                {
                    "@id": "/sample-terms/UBERON_0002740/",
                    "@type": [
                        "SampleTerm",
                        "OntologyTerm",
                        "Item"
                    ],
                    "status": "preview",
                    "summary": "posterior cingulate gyrus",
                    "term_name": "posterior cingulate gyrus"
                },
                {
                    "@id": "/sample-terms/UBERON_0002771/",
                    "@type": [
                        "SampleTerm",
                        "OntologyTerm",
                        "Item"
                    ],
                    "status": "preview",
                    "summary": "middle temporal gyrus",
                    "term_name": "middle temporal gyrus"
                }
            ],
            "status": "preview",
            "summary": "multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 6 more samples",
            "taxa": "Homo sapiens",
            "treatments": []
        }
    ],
    "schema_version": "26",
    "status": "preview",
    "submitted_by": {
        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
        "title": "Ryan Corces"
    },
    "submitted_files_timestamp": "2025-03-21T03:15:37.752114+00:00",
    "summary": "single-nucleus ATAC-seq (10x multiome)",
    "uuid": "f87997c0-b275-472b-ab4c-52f45a1e405d"
}