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IGVFDS4606LBDI

released
GRU
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
  • Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to hepatic oval stem cell for 4 days (cellular sub pool: SS-PKR 177)
Protocols
Aliases
buenrostro-bernstein:scATAC Lib 426
Attribution
Jason Buenrostro, Broad

Sequencing Results (Illumina)

36 items
Read Names
fastq
reads
R1
4340
Read 1
H75F7DSX5
3.6 GB
Jason Buenrostro, Broad
validated
fastq
reads
R1
9030
Read 1
22LMVNLT4
1.3 GB
Jason Buenrostro, Broad
validated
fastq
reads
R2
9030
Read 2
22LMVNLT4
1.2 GB
Jason Buenrostro, Broad
validated
fastq
reads
R2
9126
Read 2
22LMVNLT4
1.1 GB
Jason Buenrostro, Broad
validated
fastq
reads
R1
8646
Read 1
22LMVNLT4
1.3 GB
Jason Buenrostro, Broad
validated
fastq
reads
I1
8454
Barcode index
22LMVNLT4
768 MB
Jason Buenrostro, Broad
validated
fastq
reads
R1
3920
Read 1
22523KLT3
1.5 GB
Jason Buenrostro, Broad
validated
fastq
reads
I1
4376
Barcode index
H75F7DSX5
1.2 GB
Jason Buenrostro, Broad
validated
fastq
reads
R2
3884
Read 2
22523KLT3
708 MB
Jason Buenrostro, Broad
validated
fastq
reads
R2
8646
Read 2
22LMVNLT4
1.2 GB
Jason Buenrostro, Broad
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to hepatic oval stem cell for 4 days (cellular sub pool: SS-PKR 177)

Donors

100 items
Aliases
  • buenrostro-bernstein:Donor 1860
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1850
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1816
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1862
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1834
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1876
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1828
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1892
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1745
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1867
unspecified
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
  • buenrostro-bernstein:scRNA Lib 257
Jason Buenrostro, Broad