{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS4603LQRE",
"aliases": [
"bradley-bernstein:scATAC Lib 23",
"buenrostro-bernstein:scATAC Lib 23"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002764/",
"status": "released",
"term_name": "single-cell ATAC-seq"
},
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"INTERNAL_ACTION": [
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS4603LQRE](/measurement-sets/IGVFDS4603LQRE/) has sequence file(s): [IGVFFI7299LYSB](/sequence-files/IGVFFI7299LYSB/), [IGVFFI2115JXYI](/sequence-files/IGVFFI2115JXYI/), [IGVFFI2651QWYZ](/sequence-files/IGVFFI2651QWYZ/), [IGVFFI5037KGCG](/sequence-files/IGVFFI5037KGCG/), [IGVFFI1362PYRD](/sequence-files/IGVFFI1362PYRD/), [IGVFFI8982ZZZB](/sequence-files/IGVFFI8982ZZZB/), [IGVFFI2243EVBX](/sequence-files/IGVFFI2243EVBX/), [IGVFFI9801FVPJ](/sequence-files/IGVFFI9801FVPJ/), [IGVFFI2642ROMA](/sequence-files/IGVFFI2642ROMA/), [IGVFFI4835QBIF](/sequence-files/IGVFFI4835QBIF/), [IGVFFI9097QSSJ](/sequence-files/IGVFFI9097QSSJ/), [IGVFFI6251EVNA](/sequence-files/IGVFFI6251EVNA/), [IGVFFI5752DPJI](/sequence-files/IGVFFI5752DPJI/), [IGVFFI7748QEXL](/sequence-files/IGVFFI7748QEXL/), [IGVFFI2333FWQY](/sequence-files/IGVFFI2333FWQY/), [IGVFFI8421MDRX](/sequence-files/IGVFFI8421MDRX/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS4603LQRE/"
},
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM3834STHF](/primary-cells/IGVFSM3834STHF/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM3834STHF/"
}
],
"WARNING": [
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS4603LQRE](/measurement-sets/IGVFDS4603LQRE/) has an `assay_term` of single-cell ATAC-seq but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
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"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS4603LQRE/"
}
]
},
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},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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],
"accession": "IGVFSM3834STHF",
"aliases": [
"bradley-bernstein:BioSam 4567_SS-PKR 4",
"buenrostro-bernstein:BioSam 4567_SS-PKR 4"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 4), male, Homo sapiens (29 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:41:38.438080+00:00",
"summary": "single-cell ATAC-seq (SHARE-seq)",
"uuid": "ddd70a59-b506-4195-bbae-d549e51b215e"
}