{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS4595RDQM/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS4595RDQM",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf16_10x4"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003109/",
"assay_slims": [
"gene expression"
],
"status": "released",
"term_name": "single-nucleus RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "Measurement set [IGVFDS4595RDQM](/measurement-sets/IGVFDS4595RDQM/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/measurement-sets/IGVFDS4595RDQM/"
},
{
"category": "missing publication",
"detail": "Auxiliary set [IGVFDS8561MVXS](/auxiliary-sets/IGVFDS8561MVXS/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/auxiliary-sets/IGVFDS8561MVXS/"
},
{
"category": "mismatched status",
"detail": "Released auxiliary set [IGVFDS8561MVXS](/auxiliary-sets/IGVFDS8561MVXS/) has in progress subobject tabular file [IGVFFI2383CFVI](/tabular-files/IGVFFI2383CFVI/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/auxiliary-sets/IGVFDS8561MVXS/"
},
{
"category": "mismatched status",
"detail": "Released multiplexed sample [IGVFSM5245KVZO](/multiplexed-samples/IGVFSM5245KVZO/) has in progress subobject tabular file [IGVFFI2383CFVI](/tabular-files/IGVFFI2383CFVI/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/IGVFSM5245KVZO/"
},
{
"category": "missing publication",
"detail": "Multiplexed sample [IGVFSM5245KVZO](/multiplexed-samples/IGVFSM5245KVZO/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/multiplexed-samples/IGVFSM5245KVZO/"
}
],
"NOT_COMPLIANT": [
{
"category": "missing strand specificity",
"detail": "Measurement set [IGVFDS4595RDQM](/measurement-sets/IGVFDS4595RDQM/) is missing required `strand_specificity`. Single-cell assays are expected to specify strand specificity.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_strand_specificity",
"path": "/measurement-sets/IGVFDS4595RDQM/"
}
]
},
"auxiliary_sets": [
{
"@id": "/auxiliary-sets/IGVFDS8561MVXS/",
"accession": "IGVFDS8561MVXS",
"aliases": [
"ansuman-satpathy:multiseq_igvf16_10x4"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"status": "released"
}
],
"award": {
"@id": "/awards/HG012076/",
"component": "mapping",
"contact_pi": {
"@id": "/users/eae4c275-1e07-45e4-ae67-3e437a8680bb/",
"title": "Ansuman Satpathy"
},
"title": "Single-cell Mapping Center for Human Regulatory Elements and Gene Activity"
},
"control_for": [],
"controlled_access": true,
"creation_timestamp": "2025-02-03T21:18:28.699713+00:00",
"data_use_limitation_summaries": [
"GRU"
],
"donors": [
{
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"accession": "IGVFDO2620HPCX",
"aliases": [
"ansuman-satpathy:donor_of_B003",
"igvf:donor_B003"
],
"sex": "female",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5614PTYQ/",
"accession": "IGVFDO5614PTYQ",
"aliases": [
"ansuman-satpathy:donor_of_A004",
"igvf:donor_A004"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6441FSJH/",
"accession": "IGVFDO6441FSJH",
"aliases": [
"ansuman-satpathy:donor_of_A003",
"igvf:donor_A003"
],
"sex": "female",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0324ZSAY/",
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"igvf:donor_PENN0201-588-6"
],
"sex": "female",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2817PSCX/",
"accession": "IGVFDO2817PSCX",
"aliases": [
"ansuman-satpathy:donor_of_A009",
"igvf:donor_A009"
],
"sex": "female",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8977PNMK/",
"accession": "IGVFDO8977PNMK",
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],
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"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9716HDYX/",
"accession": "IGVFDO9716HDYX",
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],
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"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5656YCPC/",
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],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1964RNHE/",
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],
"sex": "male",
"status": "released",
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},
{
"@id": "/human-donors/IGVFDO7670TOWV/",
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],
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"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2965ZTUG/",
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],
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"status": "released",
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},
{
"@id": "/human-donors/IGVFDO2379DTAU/",
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],
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"status": "released",
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},
{
"@id": "/human-donors/IGVFDO2750DZPB/",
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],
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"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0657EMJH/",
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],
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"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4001VEAC/",
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],
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"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5261UCLF/",
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],
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"status": "released",
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},
{
"@id": "/human-donors/IGVFDO8129FWUV/",
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},
{
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},
{
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{
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},
{
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{
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{
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{
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{
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{
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},
{
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{
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