{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS4563BCFV",
"aliases": [
"bradley-bernstein:scATAC Lib 3",
"buenrostro-bernstein:scATAC Lib 3"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002764/",
"status": "released",
"term_name": "single-cell ATAC-seq"
},
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"INTERNAL_ACTION": [
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS4563BCFV](/measurement-sets/IGVFDS4563BCFV/) has sequence file(s): [IGVFFI3954GPMB](/sequence-files/IGVFFI3954GPMB/), [IGVFFI3957JOPX](/sequence-files/IGVFFI3957JOPX/), [IGVFFI3892XYMG](/sequence-files/IGVFFI3892XYMG/), [IGVFFI1871NJSS](/sequence-files/IGVFFI1871NJSS/), [IGVFFI4176XIYD](/sequence-files/IGVFFI4176XIYD/), [IGVFFI5362BWPF](/sequence-files/IGVFFI5362BWPF/), [IGVFFI5565HNNE](/sequence-files/IGVFFI5565HNNE/), [IGVFFI9825AUKB](/sequence-files/IGVFFI9825AUKB/), [IGVFFI6058LULB](/sequence-files/IGVFFI6058LULB/), [IGVFFI9491DCWA](/sequence-files/IGVFFI9491DCWA/), [IGVFFI5273FKIT](/sequence-files/IGVFFI5273FKIT/), [IGVFFI3201HPKG](/sequence-files/IGVFFI3201HPKG/), [IGVFFI2695NJNM](/sequence-files/IGVFFI2695NJNM/), [IGVFFI8222QCNL](/sequence-files/IGVFFI8222QCNL/), [IGVFFI6596NRFO](/sequence-files/IGVFFI6596NRFO/), [IGVFFI7363XROA](/sequence-files/IGVFFI7363XROA/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS4563BCFV/"
},
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM2806AZKY](/primary-cells/IGVFSM2806AZKY/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM2806AZKY/"
}
],
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{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS4563BCFV](/measurement-sets/IGVFDS4563BCFV/) has an `assay_term` of single-cell ATAC-seq but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS4563BCFV/"
}
]
},
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"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 1), male, Homo sapiens (29 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:30:24.060654+00:00",
"summary": "single-cell ATAC-seq (SHARE-seq)",
"uuid": "a625cb79-40a3-436c-aae9-01279a66f8e1"
}