{
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],
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],
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],
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{
"category": "NTR term ID",
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"name": "audit_ntr_term_id",
"path": "/sample-terms/NTR_0000646/"
},
{
"category": "missing publication",
"detail": "Measurement set [IGVFDS4471CCED](/measurement-sets/IGVFDS4471CCED/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
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"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/measurement-sets/IGVFDS4471CCED/"
},
{
"category": "missing publication",
"detail": "Tissue [IGVFSM8448JQZQ](/tissues/IGVFSM8448JQZQ/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/tissues/IGVFSM8448JQZQ/"
}
],
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{
"category": "missing strand specificity",
"detail": "Measurement set [IGVFDS4471CCED](/measurement-sets/IGVFDS4471CCED/) is missing required `strand_specificity`. Single-cell assays are expected to specify strand specificity.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_strand_specificity",
"path": "/measurement-sets/IGVFDS4471CCED/"
}
]
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"title": "Ansuman Satpathy"
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"title": "Single-cell Mapping Center for Human Regulatory Elements and Gene Activity"
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{
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],
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}
],
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],
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{
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"creation_timestamp": "2024-07-23T01:38:26.113402+00:00",
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"status": "released",
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"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1647PZKF/",
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"creation_timestamp": "2024-07-23T01:40:21.977913+00:00",
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"term_name": "Illumina NovaSeq 6000"
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"submitted_file_name": "/oak/stanford/projects/igvf/Projects/230622_IGVF_Bridge_McGinnis/GEX/RNA_104_S3_L004_R2_001.fastq.gz",
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},
{
"@id": "/sequence-files/IGVFFI2297XVRZ/",
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"controlled_access": false,
"creation_timestamp": "2024-07-23T01:37:01.653866+00:00",
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"file_size": 2355784006,
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"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI4015ELXI/",
"accession": "IGVFFI4015ELXI",
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],
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"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS5230RAFR/",
"/analysis-sets/IGVFDS5717EBEY/",
"/analysis-sets/IGVFDS6262OKGB/"
],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"multiome_size": 2,
"onlist_files": [
"/tabular-files/IGVFFI8751YQRY/"
],
"onlist_method": "no combination",
"preferred_assay_title": "10x multiome",
"protocols": [
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],
"related_multiome_datasets": [
{
"@id": "/measurement-sets/IGVFDS2556FUQS/",
"accession": "IGVFDS2556FUQS",
"status": "released"
}
],
"release_timestamp": "2025-03-07T01:18:42.959908+00:00",
"samples": [
{
"@id": "/tissues/IGVFSM8448JQZQ/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8448JQZQ",
"aliases": [
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],
"classifications": [
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],
"institutional_certificates": [],
"sample_terms": [
{
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"@type": [
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],
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}
],
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"submitted_files_timestamp": "2024-07-23T01:37:01.653866+00:00",
"summary": "single-nucleus RNA sequencing assay (10x multiome)",
"uuid": "57c5af49-a5c4-4aa4-85ac-01f6ce2fe8a5"
}