{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS4468RMYH/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS4468RMYH",
"aliases": [
"buenrostro-bernstein:scATAC Lib 390"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002764/",
"assay_slims": [
"chromatin accessibility"
],
"status": "released",
"term_name": "single-cell ATAC-seq"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM7278VIVW](/in-vitro-systems/IGVFSM7278VIVW/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM7278VIVW/"
},
{
"category": "missing publication",
"detail": "Measurement set [IGVFDS4468RMYH](/measurement-sets/IGVFDS4468RMYH/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/measurement-sets/IGVFDS4468RMYH/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS4468RMYH](/measurement-sets/IGVFDS4468RMYH/) has in progress subobject tabular file [IGVFFI5522PXUM](/tabular-files/IGVFFI5522PXUM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS4468RMYH/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS4468RMYH](/measurement-sets/IGVFDS4468RMYH/) has in progress subobject tabular file [IGVFFI0400MBIM](/tabular-files/IGVFFI0400MBIM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS4468RMYH/"
}
]
},
"award": {
"@id": "/awards/HG011986/",
"component": "mapping",
"contact_pi": {
"@id": "/users/33c6eb70-e143-4f77-9661-4b3905737daa/",
"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
"control_for": [],
"controlled_access": true,
"creation_timestamp": "2024-08-20T14:57:26.021399+00:00",
"data_use_limitation_summaries": [
"GRU"
],
"donors": [
{
"@id": "/human-donors/IGVFDO3620CEGY/",
"accession": "IGVFDO3620CEGY",
"aliases": [
"buenrostro-bernstein:Donor 1667"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8300LREN/",
"accession": "IGVFDO8300LREN",
"aliases": [
"buenrostro-bernstein:Donor 1670"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0508ZIBJ/",
"accession": "IGVFDO0508ZIBJ",
"aliases": [
"buenrostro-bernstein:Donor 1681"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3154SUBV/",
"accession": "IGVFDO3154SUBV",
"aliases": [
"buenrostro-bernstein:Donor 1746"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5922XFFX/",
"accession": "IGVFDO5922XFFX",
"aliases": [
"buenrostro-bernstein:Donor 1718"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3221BPGT/",
"accession": "IGVFDO3221BPGT",
"aliases": [
"buenrostro-bernstein:Donor 1730"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9772VWGF/",
"accession": "IGVFDO9772VWGF",
"aliases": [
"buenrostro-bernstein:Donor 1712"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7730CFCO/",
"accession": "IGVFDO7730CFCO",
"aliases": [
"buenrostro-bernstein:Donor 1678"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2216WEMV/",
"accession": "IGVFDO2216WEMV",
"aliases": [
"buenrostro-bernstein:Donor 1715"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1499NRJY/",
"accession": "IGVFDO1499NRJY",
"aliases": [
"buenrostro-bernstein:Donor 1676"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0436YOXD/",
"accession": "IGVFDO0436YOXD",
"aliases": [
"buenrostro-bernstein:Donor 1745"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8753ORWI/",
"accession": "IGVFDO8753ORWI",
"aliases": [
"buenrostro-bernstein:Donor 1737"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1195MSTI/",
"accession": "IGVFDO1195MSTI",
"aliases": [
"buenrostro-bernstein:Donor 1685"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8623DFZV/",
"accession": "IGVFDO8623DFZV",
"aliases": [
"buenrostro-bernstein:Donor 1689"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8315GKHU/",
"accession": "IGVFDO8315GKHU",
"aliases": [
"buenrostro-bernstein:Donor 1721"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0673LUEU/",
"accession": "IGVFDO0673LUEU",
"aliases": [
"buenrostro-bernstein:Donor 1661"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4380OVNW/",
"accession": "IGVFDO4380OVNW",
"aliases": [
"buenrostro-bernstein:Donor 1713"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8979DYIF/",
"accession": "IGVFDO8979DYIF",
"aliases": [
"buenrostro-bernstein:Donor 1743"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4534QGFO/",
"accession": "IGVFDO4534QGFO",
"aliases": [
"buenrostro-bernstein:Donor 1691"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0080AJWC/",
"accession": "IGVFDO0080AJWC",
"aliases": [
"buenrostro-bernstein:Donor 1719"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1234AAAE/",
"accession": "IGVFDO1234AAAE",
"aliases": [
"buenrostro-bernstein:Donor 1673"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4535IABG/",
"accession": "IGVFDO4535IABG",
"aliases": [
"buenrostro-bernstein:Donor 1701"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3402AXNZ/",
"accession": "IGVFDO3402AXNZ",
"aliases": [
"buenrostro-bernstein:Donor 1664"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2179KJBX/",
"accession": "IGVFDO2179KJBX",
"aliases": [
"buenrostro-bernstein:Donor 1710"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1533MKVB/",
"accession": "IGVFDO1533MKVB",
"aliases": [
"buenrostro-bernstein:Donor 1739"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8776OLQD/",
"accession": "IGVFDO8776OLQD",
"aliases": [
"buenrostro-bernstein:Donor 1744"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3742QYPD/",
"accession": "IGVFDO3742QYPD",
"aliases": [
"buenrostro-bernstein:Donor 1700"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0993WNIW/",
"accession": "IGVFDO0993WNIW",
"aliases": [
"buenrostro-bernstein:Donor 1668"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4723DYAE/",
"accession": "IGVFDO4723DYAE",
"aliases": [
"buenrostro-bernstein:Donor 1660"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3469EFJR/",
"accession": "IGVFDO3469EFJR",
"aliases": [
"buenrostro-bernstein:Donor 1741"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7138YKKN/",
"accession": "IGVFDO7138YKKN",
"aliases": [
"buenrostro-bernstein:Donor 1692"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2149LCYH/",
"accession": "IGVFDO2149LCYH",
"aliases": [
"buenrostro-bernstein:Donor 1724"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9506VMLU/",
"accession": "IGVFDO9506VMLU",
"aliases": [
"buenrostro-bernstein:Donor 1662"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8502UZWR/",
"accession": "IGVFDO8502UZWR",
"aliases": [
"buenrostro-bernstein:Donor 1707"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9942ECYN/",
"accession": "IGVFDO9942ECYN",
"aliases": [
"buenrostro-bernstein:Donor 1742"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4448MNLF/",
"accession": "IGVFDO4448MNLF",
"aliases": [
"buenrostro-bernstein:Donor 1696"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8910GBTE/",
"accession": "IGVFDO8910GBTE",
"aliases": [
"buenrostro-bernstein:Donor 1734"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6767OVOS/",
"accession": "IGVFDO6767OVOS",
"aliases": [
"buenrostro-bernstein:Donor 1736"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4448APZX/",
"accession": "IGVFDO4448APZX",
"aliases": [
"buenrostro-bernstein:Donor 1703"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5885PQJM/",
"accession": "IGVFDO5885PQJM",
"aliases": [
"buenrostro-bernstein:Donor 1658"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1296IFXP/",
"accession": "IGVFDO1296IFXP",
"aliases": [
"buenrostro-bernstein:Donor 1682"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7661NEKG/",
"accession": "IGVFDO7661NEKG",
"aliases": [
"buenrostro-bernstein:Donor 1698"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7528UJWM/",
"accession": "IGVFDO7528UJWM",
"aliases": [
"buenrostro-bernstein:Donor 1697"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6126AWVH/",
"accession": "IGVFDO6126AWVH",
"aliases": [
"buenrostro-bernstein:Donor 1686"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9672RNCH/",
"accession": "IGVFDO9672RNCH",
"aliases": [
"buenrostro-bernstein:Donor 1688"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8237NSQG/",
"accession": "IGVFDO8237NSQG",
"aliases": [
"buenrostro-bernstein:Donor 1711"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0554TWWH/",
"accession": "IGVFDO0554TWWH",
"aliases": [
"buenrostro-bernstein:Donor 1663"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1290VOVC/",
"accession": "IGVFDO1290VOVC",
"aliases": [
"buenrostro-bernstein:Donor 1705"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1867CNFN/",
"accession": "IGVFDO1867CNFN",
"aliases": [
"buenrostro-bernstein:Donor 1680"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0188QZTI/",
"accession": "IGVFDO0188QZTI",
"aliases": [
"buenrostro-bernstein:Donor 1735"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0533MSQJ/",
"accession": "IGVFDO0533MSQJ",
"aliases": [
"buenrostro-bernstein:Donor 1665"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5142SUYF/",
"accession": "IGVFDO5142SUYF",
"aliases": [
"buenrostro-bernstein:Donor 1690"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2649JQXX/",
"accession": "IGVFDO2649JQXX",
"aliases": [
"buenrostro-bernstein:Donor 1659"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5659GWYA/",
"accession": "IGVFDO5659GWYA",
"aliases": [
"buenrostro-bernstein:Donor 1728"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8383RATI/",
"accession": "IGVFDO8383RATI",
"aliases": [
"buenrostro-bernstein:Donor 1672"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2402XWOB/",
"accession": "IGVFDO2402XWOB",
"aliases": [
"buenrostro-bernstein:Donor 1704"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9752KKXF/",
"accession": "IGVFDO9752KKXF",
"aliases": [
"buenrostro-bernstein:Donor 1722"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5035RSOM/",
"accession": "IGVFDO5035RSOM",
"aliases": [
"buenrostro-bernstein:Donor 1733"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8124AYVF/",
"accession": "IGVFDO8124AYVF",
"aliases": [
"buenrostro-bernstein:Donor 1740"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6875RNLP/",
"accession": "IGVFDO6875RNLP",
"aliases": [
"buenrostro-bernstein:Donor 1716"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6890GTBA/",
"accession": "IGVFDO6890GTBA",
"aliases": [
"buenrostro-bernstein:Donor 1671"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7165KOCS/",
"accession": "IGVFDO7165KOCS",
"aliases": [
"buenrostro-bernstein:Donor 1683"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1173NZNR/",
"accession": "IGVFDO1173NZNR",
"aliases": [
"buenrostro-bernstein:Donor 1725"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4951MIRW/",
"accession": "IGVFDO4951MIRW",
"aliases": [
"buenrostro-bernstein:Donor 1723"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0817QBZD/",
"accession": "IGVFDO0817QBZD",
"aliases": [
"buenrostro-bernstein:Donor 1675"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1593DWAA/",
"accession": "IGVFDO1593DWAA",
"aliases": [
"buenrostro-bernstein:Donor 1702"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3034QOTF/",
"accession": "IGVFDO3034QOTF",
"aliases": [
"buenrostro-bernstein:Donor 1720"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9706LANY/",
"accession": "IGVFDO9706LANY",
"aliases": [
"buenrostro-bernstein:Donor 1674"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2287CVZF/",
"accession": "IGVFDO2287CVZF",
"aliases": [
"buenrostro-bernstein:Donor 1708"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6760VSYK/",
"accession": "IGVFDO6760VSYK",
"aliases": [
"buenrostro-bernstein:Donor 1709"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4062HKSZ/",
"accession": "IGVFDO4062HKSZ",
"aliases": [
"buenrostro-bernstein:Donor 1695"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4461NKYB/",
"accession": "IGVFDO4461NKYB",
"aliases": [
"buenrostro-bernstein:Donor 1727"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2860VILP/",
"accession": "IGVFDO2860VILP",
"aliases": [
"buenrostro-bernstein:Donor 1666"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8425CFJW/",
"accession": "IGVFDO8425CFJW",
"aliases": [
"buenrostro-bernstein:Donor 1717"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1982MZWK/",
"accession": "IGVFDO1982MZWK",
"aliases": [
"buenrostro-bernstein:Donor 1738"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5614SKSA/",
"accession": "IGVFDO5614SKSA",
"aliases": [
"buenrostro-bernstein:Donor 1729"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6420BUOT/",
"accession": "IGVFDO6420BUOT",
"aliases": [
"buenrostro-bernstein:Donor 1687"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5062VEQA/",
"accession": "IGVFDO5062VEQA",
"aliases": [
"buenrostro-bernstein:Donor 1679"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3222ZPKA/",
"accession": "IGVFDO3222ZPKA",
"aliases": [
"buenrostro-bernstein:Donor 1732"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2874TLHM/",
"accession": "IGVFDO2874TLHM",
"aliases": [
"buenrostro-bernstein:Donor 1706"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7268VSSU/",
"accession": "IGVFDO7268VSSU",
"aliases": [
"buenrostro-bernstein:Donor 1726"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9555ARCU/",
"accession": "IGVFDO9555ARCU",
"aliases": [
"buenrostro-bernstein:Donor 1684"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9375TNMP/",
"accession": "IGVFDO9375TNMP",
"aliases": [
"buenrostro-bernstein:Donor 1693"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9010UZXK/",
"accession": "IGVFDO9010UZXK",
"aliases": [
"buenrostro-bernstein:Donor 1731"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1009JNIM/",
"accession": "IGVFDO1009JNIM",
"aliases": [
"buenrostro-bernstein:Donor 1714"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4376OYXM/",
"accession": "IGVFDO4376OYXM",
"aliases": [
"buenrostro-bernstein:Donor 1669"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4992UAIR/",
"accession": "IGVFDO4992UAIR",
"aliases": [
"buenrostro-bernstein:Donor 1677"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0823IGCQ/",
"accession": "IGVFDO0823IGCQ",
"aliases": [
"buenrostro-bernstein:Donor 1694"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2537BYJQ/",
"accession": "IGVFDO2537BYJQ",
"aliases": [
"buenrostro-bernstein:Donor 1699"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI8737GBTL/",
"accession": "IGVFFI8737GBTL",
"aliases": [
"buenrostro-bernstein:SS-LS_920_R2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-08-20T15:07:50.028135+00:00",
"file_format": "fastq",
"file_size": 34120090,
"href": "/sequence-files/IGVFFI8737GBTL/@@download/IGVFFI8737GBTL.fastq.gz",
"md5sum": "6a7780d8a08bc02f1a2290e9a71329d9",
"s3_uri": "s3://igvf-restricted-files/2024/08/20/e5fbde4d-feb8-4c15-8b4a-2bbe1f46c272/IGVFFI8737GBTL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/69c315c5-fa46-4d72-943a-6a5fc580c36b/call-create_fastq_barcode/shard-14/SS-CoPA-933_L1_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R2.R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6070IFRT/",
"accession": "IGVFFI6070IFRT",
"aliases": [
"buenrostro-bernstein:SS-LS_920_R1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-08-20T15:07:49.044911+00:00",
"file_format": "fastq",
"file_size": 69951895,
"href": "/sequence-files/IGVFFI6070IFRT/@@download/IGVFFI6070IFRT.fastq.gz",
"md5sum": "a111b9598298fb2f0418e5d4f3a94f34",
"s3_uri": "s3://igvf-restricted-files/2024/08/20/874f8904-f4a2-4381-a6ac-04663d1afe00/IGVFFI6070IFRT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://broad-epi-ss-lane-subsets/SS-CoPA-933_L1_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1107SOWY/",
"accession": "IGVFFI1107SOWY",
"aliases": [
"buenrostro-bernstein:SS-LS_962_R1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-08-20T15:09:25.347172+00:00",
"file_format": "fastq",
"file_size": 70191995,
"href": "/sequence-files/IGVFFI1107SOWY/@@download/IGVFFI1107SOWY.fastq.gz",
"md5sum": "a0e045e8709eada04988065cfc7c6fcc",
"s3_uri": "s3://igvf-restricted-files/2024/08/20/5946993b-d80e-465b-9973-de978ec3af2f/IGVFFI1107SOWY.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://broad-epi-ss-lane-subsets/SS-CoPA-933_L2_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5550MCAN/",
"accession": "IGVFFI5550MCAN",
"aliases": [
"buenrostro-bernstein:SS-LS_1004_R2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-08-20T15:11:26.404060+00:00",
"file_format": "fastq",
"file_size": 34229532,
"href": "/sequence-files/IGVFFI5550MCAN/@@download/IGVFFI5550MCAN.fastq.gz",
"md5sum": "df8a94977b56500ba7bb76b0f517b6a1",
"s3_uri": "s3://igvf-restricted-files/2024/08/20/a0f6d17b-1dbb-47f6-9022-6ec04408e4dd/IGVFFI5550MCAN.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/69c315c5-fa46-4d72-943a-6a5fc580c36b/call-create_fastq_barcode/shard-12/SS-CoPA-933_L3_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R2.R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6637UCON/",
"accession": "IGVFFI6637UCON",
"aliases": [
"buenrostro-bernstein:SS-LS_1004_R1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-08-20T15:11:25.416635+00:00",
"file_format": "fastq",
"file_size": 70208977,
"href": "/sequence-files/IGVFFI6637UCON/@@download/IGVFFI6637UCON.fastq.gz",
"md5sum": "b8951e870608b374b3880be2354e0e5d",
"s3_uri": "s3://igvf-restricted-files/2024/08/20/7b75fe28-4714-42f5-b719-dc18e1d71cc8/IGVFFI6637UCON.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://broad-epi-ss-lane-subsets/SS-CoPA-933_L3_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9128JKGV/",
"accession": "IGVFFI9128JKGV",
"aliases": [
"buenrostro-bernstein:SS-LS_1046_R2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-08-20T15:13:00.802931+00:00",
"file_format": "fastq",
"file_size": 33879552,
"href": "/sequence-files/IGVFFI9128JKGV/@@download/IGVFFI9128JKGV.fastq.gz",
"md5sum": "2b918ee14cc033d226c5321f3d039d5d",
"s3_uri": "s3://igvf-restricted-files/2024/08/20/05aa46b4-5fde-4fb7-9cba-8a5fd768a694/IGVFFI9128JKGV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/69c315c5-fa46-4d72-943a-6a5fc580c36b/call-create_fastq_barcode/shard-11/SS-CoPA-933_L4_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R2.R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7639ROPM/",
"accession": "IGVFFI7639ROPM",
"aliases": [
"buenrostro-bernstein:SS-LS_962_R2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-08-20T15:09:26.377027+00:00",
"file_format": "fastq",
"file_size": 34225272,
"href": "/sequence-files/IGVFFI7639ROPM/@@download/IGVFFI7639ROPM.fastq.gz",
"md5sum": "dd834a574b9dca015a274c02739ef12e",
"s3_uri": "s3://igvf-restricted-files/2024/08/20/45b53ff3-2992-41f1-b49f-0b21bfbe6fc2/IGVFFI7639ROPM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/69c315c5-fa46-4d72-943a-6a5fc580c36b/call-create_fastq_barcode/shard-13/SS-CoPA-933_L2_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R2.R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5390BYOK/",
"accession": "IGVFFI5390BYOK",
"aliases": [
"buenrostro-bernstein:SS-LS_1046_R1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-08-20T15:12:59.867680+00:00",
"file_format": "fastq",
"file_size": 69416950,
"href": "/sequence-files/IGVFFI5390BYOK/@@download/IGVFFI5390BYOK.fastq.gz",
"md5sum": "c9df051f78a79b480fcdb4db554b07bd",
"s3_uri": "s3://igvf-restricted-files/2024/08/20/f19ac15f-f544-4692-97af-38d7edd991a7/IGVFFI5390BYOK.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://broad-epi-ss-lane-subsets/SS-CoPA-933_L4_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5003POCR/",
"accession": "IGVFFI5003POCR",
"aliases": [
"buenrostro-bernstein:SS-LS_4014_R2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-08-20T15:21:26.666529+00:00",
"file_format": "fastq",
"file_size": 247351762,
"href": "/sequence-files/IGVFFI5003POCR/@@download/IGVFFI5003POCR.fastq.gz",
"md5sum": "7b3aeb62c324d370f98e5da299457a5c",
"s3_uri": "s3://igvf-restricted-files/2024/08/20/5ba97eaf-dbd9-46fb-aed6-0dbad510dadb/IGVFFI5003POCR.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/69c315c5-fa46-4d72-943a-6a5fc580c36b/call-create_fastq_barcode/shard-10/SS-CoPA-715_L1_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R2.R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7886QZLQ/",
"accession": "IGVFFI7886QZLQ",
"aliases": [
"buenrostro-bernstein:SS-LS_4086_R2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-08-20T15:24:30.359169+00:00",
"file_format": "fastq",
"file_size": 250215747,
"href": "/sequence-files/IGVFFI7886QZLQ/@@download/IGVFFI7886QZLQ.fastq.gz",
"md5sum": "fe9ccdc01129a3894fb47c25ddb5d9e7",
"s3_uri": "s3://igvf-restricted-files/2024/08/20/1c82e4a4-8fed-4353-af6f-8e94b55610f7/IGVFFI7886QZLQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/69c315c5-fa46-4d72-943a-6a5fc580c36b/call-create_fastq_barcode/shard-8/SS-CoPA-715_L3_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R2.R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4138PJPF/",
"accession": "IGVFFI4138PJPF",
"aliases": [
"buenrostro-bernstein:SS-LS_4050_R2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-08-20T15:22:45.467490+00:00",
"file_format": "fastq",
"file_size": 248938524,
"href": "/sequence-files/IGVFFI4138PJPF/@@download/IGVFFI4138PJPF.fastq.gz",
"md5sum": "e66e7d06181cd6d9ced304ae5d7e0b50",
"s3_uri": "s3://igvf-restricted-files/2024/08/20/5403c644-8f3f-43b0-8770-a05909019fbe/IGVFFI4138PJPF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/69c315c5-fa46-4d72-943a-6a5fc580c36b/call-create_fastq_barcode/shard-9/SS-CoPA-715_L2_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R2.R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7323TTYN/",
"accession": "IGVFFI7323TTYN",
"aliases": [
"buenrostro-bernstein:SS-LS_4014_R1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-08-20T15:21:25.721106+00:00",
"file_format": "fastq",
"file_size": 512130815,
"href": "/sequence-files/IGVFFI7323TTYN/@@download/IGVFFI7323TTYN.fastq.gz",
"md5sum": "dffbed0188bbaf121bd72315f58b01a1",
"s3_uri": "s3://igvf-restricted-files/2024/08/20/540ee083-9c88-48fc-988e-847fc80cd4f0/IGVFFI7323TTYN.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://broad-epi-ss-lane-subsets/SS-CoPA-715_L1_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9005HFMZ/",
"accession": "IGVFFI9005HFMZ",
"aliases": [
"buenrostro-bernstein:SS-LS_4050_R1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-08-20T15:22:44.526852+00:00",
"file_format": "fastq",
"file_size": 515189332,
"href": "/sequence-files/IGVFFI9005HFMZ/@@download/IGVFFI9005HFMZ.fastq.gz",
"md5sum": "ca2e3dd701272a0fb81055999bbcae6e",
"s3_uri": "s3://igvf-restricted-files/2024/08/20/b37828d2-195b-47e1-95f4-39cc6a7f2db5/IGVFFI9005HFMZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://broad-epi-ss-lane-subsets/SS-CoPA-715_L2_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3785DXFB/",
"accession": "IGVFFI3785DXFB",
"aliases": [
"buenrostro-bernstein:SS-LS_4086_R1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-08-20T15:24:29.236669+00:00",
"file_format": "fastq",
"file_size": 517943687,
"href": "/sequence-files/IGVFFI3785DXFB/@@download/IGVFFI3785DXFB.fastq.gz",
"md5sum": "ea1d7c153130ab2e77998a997aa9b041",
"s3_uri": "s3://igvf-restricted-files/2024/08/20/70bf91ca-3b40-4117-9bd9-97e301134821/IGVFFI3785DXFB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://broad-epi-ss-lane-subsets/SS-CoPA-715_L3_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI1657URQQ/",
"accession": "IGVFFI1657URQQ",
"aliases": [
"buenrostro-bernstein:SS-LS_4086_seqspec"
],
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T14:30:40.878353+00:00",
"file_format": "yaml",
"file_size": 1341,
"href": "/configuration-files/IGVFFI1657URQQ/@@download/IGVFFI1657URQQ.yaml.gz",
"md5sum": "89e9fb9989c56634d4286ac17975c978",
"s3_uri": "s3://igvf-files/2024/09/18/61289217-ee3c-424f-9083-257936649afb/IGVFFI1657URQQ.yaml.gz",
"status": "released",
"submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI3785DXFB_seqspec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI4506MPIE/",
"accession": "IGVFFI4506MPIE",
"aliases": [
"buenrostro-bernstein:SS-LS_4050_seqspec"
],
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T14:31:12.733083+00:00",
"file_format": "yaml",
"file_size": 1342,
"href": "/configuration-files/IGVFFI4506MPIE/@@download/IGVFFI4506MPIE.yaml.gz",
"md5sum": "13e68fbd631f79b1caae1a747bc2f87e",
"s3_uri": "s3://igvf-files/2024/09/18/f7c6df8d-7150-4d14-9893-c2d624c4986c/IGVFFI4506MPIE.yaml.gz",
"status": "released",
"submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI9005HFMZ_seqspec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI6714AHHY/",
"accession": "IGVFFI6714AHHY",
"aliases": [
"buenrostro-bernstein:SS-LS_1004_seqspec"
],
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T14:34:19.383650+00:00",
"file_format": "yaml",
"file_size": 1335,
"href": "/configuration-files/IGVFFI6714AHHY/@@download/IGVFFI6714AHHY.yaml.gz",
"md5sum": "0487268a129f4baf62c8972c5c013ef4",
"s3_uri": "s3://igvf-files/2024/09/18/3a6a7e95-b52d-44ad-937d-b18d5206cc9c/IGVFFI6714AHHY.yaml.gz",
"status": "released",
"submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI6637UCON_seqspec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI4959ORRE/",
"accession": "IGVFFI4959ORRE",
"aliases": [
"buenrostro-bernstein:SS-LS_4014_seqspec"
],
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T14:31:44.916176+00:00",
"file_format": "yaml",
"file_size": 1339,
"href": "/configuration-files/IGVFFI4959ORRE/@@download/IGVFFI4959ORRE.yaml.gz",
"md5sum": "9aa4009acab9bfc11f05eca2b56d3d89",
"s3_uri": "s3://igvf-files/2024/09/18/f41cf121-f760-4efc-a465-4800aea51e35/IGVFFI4959ORRE.yaml.gz",
"status": "released",
"submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI7323TTYN_seqspec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI4503ZMDF/",
"accession": "IGVFFI4503ZMDF",
"aliases": [
"buenrostro-bernstein:SS-LS_1046_seqspec"
],
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T14:33:42.683239+00:00",
"file_format": "yaml",
"file_size": 1338,
"href": "/configuration-files/IGVFFI4503ZMDF/@@download/IGVFFI4503ZMDF.yaml.gz",
"md5sum": "4decfc7f0352c44f0c4e596d3df8da83",
"s3_uri": "s3://igvf-files/2024/09/18/5cf21829-5208-4e74-ae33-c37b328a6f78/IGVFFI4503ZMDF.yaml.gz",
"status": "released",
"submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI5390BYOK_seqspec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI8966TEXY/",
"accession": "IGVFFI8966TEXY",
"aliases": [
"buenrostro-bernstein:SS-LS_920_seqspec"
],
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T14:35:35.384806+00:00",
"file_format": "yaml",
"file_size": 1338,
"href": "/configuration-files/IGVFFI8966TEXY/@@download/IGVFFI8966TEXY.yaml.gz",
"md5sum": "3b128c0a9c4420f26cd80c9ec491deee",
"s3_uri": "s3://igvf-files/2024/09/18/326021fe-2544-426a-938c-ca2add68e68b/IGVFFI8966TEXY.yaml.gz",
"status": "released",
"submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI6070IFRT_seqspec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI5840ICLA/",
"accession": "IGVFFI5840ICLA",
"aliases": [
"buenrostro-bernstein:SS-LS_962_seqspec"
],
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T14:34:56.957538+00:00",
"file_format": "yaml",
"file_size": 1338,
"href": "/configuration-files/IGVFFI5840ICLA/@@download/IGVFFI5840ICLA.yaml.gz",
"md5sum": "4c78352d7a17ec3f4ebbf4cc9cc3a9b9",
"s3_uri": "s3://igvf-files/2024/09/18/14aeef0f-ec6d-415c-891c-08c53000cf26/IGVFFI5840ICLA.yaml.gz",
"status": "released",
"submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI1107SOWY_seqspec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2209FTLB/",
"accession": "IGVFFI2209FTLB",
"aliases": [
"buenrostro-bernstein:SS-LS_1004_barcode"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-25T02:11:27.006547+00:00",
"file_format": "fastq",
"file_size": 30720972,
"href": "/sequence-files/IGVFFI2209FTLB/@@download/IGVFFI2209FTLB.fastq.gz",
"md5sum": "3e41292921c3cffafe167c1fafb44822",
"s3_uri": "s3://igvf-restricted-files/2025/03/25/1c73aa83-e14a-4bd7-a509-6ac203917425/IGVFFI2209FTLB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/69c315c5-fa46-4d72-943a-6a5fc580c36b/call-create_fastq_barcode/shard-12/SS-CoPA-933_L3_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R2.barcode_file.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6848YPFM/",
"accession": "IGVFFI6848YPFM",
"aliases": [
"buenrostro-bernstein:SS-LS_4014_barcode"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-25T02:17:58.623324+00:00",
"file_format": "fastq",
"file_size": 215159064,
"href": "/sequence-files/IGVFFI6848YPFM/@@download/IGVFFI6848YPFM.fastq.gz",
"md5sum": "2a5e648bead24cb76172421af9677f34",
"s3_uri": "s3://igvf-restricted-files/2025/03/25/fba58991-633d-459a-9ef3-32fd02510e28/IGVFFI6848YPFM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/69c315c5-fa46-4d72-943a-6a5fc580c36b/call-create_fastq_barcode/shard-10/SS-CoPA-715_L1_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R2.barcode_file.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9657QNZD/",
"accession": "IGVFFI9657QNZD",
"aliases": [
"buenrostro-bernstein:SS-LS_1046_barcode"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-25T02:12:35.610991+00:00",
"file_format": "fastq",
"file_size": 30275189,
"href": "/sequence-files/IGVFFI9657QNZD/@@download/IGVFFI9657QNZD.fastq.gz",
"md5sum": "c616f7d544f7b53b8e657283091832a4",
"s3_uri": "s3://igvf-restricted-files/2025/03/25/7094968d-eb11-40a5-b1e2-ac471a01a3a0/IGVFFI9657QNZD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/69c315c5-fa46-4d72-943a-6a5fc580c36b/call-create_fastq_barcode/shard-11/SS-CoPA-933_L4_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R2.barcode_file.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7934WNHM/",
"accession": "IGVFFI7934WNHM",
"aliases": [
"buenrostro-bernstein:SS-LS_4050_barcode"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-25T02:18:58.759335+00:00",
"file_format": "fastq",
"file_size": 216519595,
"href": "/sequence-files/IGVFFI7934WNHM/@@download/IGVFFI7934WNHM.fastq.gz",
"md5sum": "d0ca99a5811801c0eeafc7bbaa1faa24",
"s3_uri": "s3://igvf-restricted-files/2025/03/25/a9ed5224-3382-4f6b-a891-5eb79c83ce72/IGVFFI7934WNHM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/69c315c5-fa46-4d72-943a-6a5fc580c36b/call-create_fastq_barcode/shard-9/SS-CoPA-715_L2_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R2.barcode_file.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6928BPHI/",
"accession": "IGVFFI6928BPHI",
"aliases": [
"buenrostro-bernstein:SS-LS_4086_barcode"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-25T02:20:02.333224+00:00",
"file_format": "fastq",
"file_size": 217918363,
"href": "/sequence-files/IGVFFI6928BPHI/@@download/IGVFFI6928BPHI.fastq.gz",
"md5sum": "27d9287c08c11a7a0d2ac87314eaa41e",
"s3_uri": "s3://igvf-restricted-files/2025/03/25/47812499-80d9-47c6-a93e-4eebf47f5ae8/IGVFFI6928BPHI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/69c315c5-fa46-4d72-943a-6a5fc580c36b/call-create_fastq_barcode/shard-8/SS-CoPA-715_L3_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R2.barcode_file.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3980FIUD/",
"accession": "IGVFFI3980FIUD",
"aliases": [
"buenrostro-bernstein:SS-LS_8532_barcode"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-26T15:06:18.102989+00:00",
"file_format": "fastq",
"file_size": 494829,
"href": "/sequence-files/IGVFFI3980FIUD/@@download/IGVFFI3980FIUD.fastq.gz",
"md5sum": "cde6e4c77faf3cf6133a9aaa8811fd47",
"s3_uri": "s3://igvf-restricted-files/2025/03/26/c0ab81d8-aa3b-448c-ac2a-c13476c79c27/IGVFFI3980FIUD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/69c315c5-fa46-4d72-943a-6a5fc580c36b/call-create_fastq_barcode/shard-6/SS-CoPA-2266_L2_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R2.barcode_file.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6529EIOD/",
"accession": "IGVFFI6529EIOD",
"aliases": [
"buenrostro-bernstein:SS-LS_8628_barcode"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-26T15:10:11.528459+00:00",
"file_format": "fastq",
"file_size": 498464,
"href": "/sequence-files/IGVFFI6529EIOD/@@download/IGVFFI6529EIOD.fastq.gz",
"md5sum": "15b4e61539600788e24ad55548ec08a7",
"s3_uri": "s3://igvf-restricted-files/2025/03/26/df17cd0d-e005-4604-b747-e9b1ed1c2651/IGVFFI6529EIOD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/69c315c5-fa46-4d72-943a-6a5fc580c36b/call-create_fastq_barcode/shard-5/SS-CoPA-2266_L3_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R2.barcode_file.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7991SDXP/",
"accession": "IGVFFI7991SDXP",
"aliases": [
"buenrostro-bernstein:SS-LS_8724_barcode"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-26T15:14:17.581219+00:00",
"file_format": "fastq",
"file_size": 482994,
"href": "/sequence-files/IGVFFI7991SDXP/@@download/IGVFFI7991SDXP.fastq.gz",
"md5sum": "3b36560a2aa782c549881063f5ae8485",
"s3_uri": "s3://igvf-restricted-files/2025/03/26/f8fa5fe6-3c9a-4e9d-aa70-e6348c5bda31/IGVFFI7991SDXP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/69c315c5-fa46-4d72-943a-6a5fc580c36b/call-create_fastq_barcode/shard-4/SS-CoPA-2266_L4_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R2.barcode_file.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5348BETI/",
"accession": "IGVFFI5348BETI",
"aliases": [
"buenrostro-bernstein:SS-LS_920_barcode"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-25T02:29:53.473749+00:00",
"file_format": "fastq",
"file_size": 30487388,
"href": "/sequence-files/IGVFFI5348BETI/@@download/IGVFFI5348BETI.fastq.gz",
"md5sum": "74e4e9f5538d7954b140d5a040ec6ab0",
"s3_uri": "s3://igvf-restricted-files/2025/03/25/37193478-fb7d-43fe-9e09-d4bcf1425466/IGVFFI5348BETI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/69c315c5-fa46-4d72-943a-6a5fc580c36b/call-create_fastq_barcode/shard-14/SS-CoPA-933_L1_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R2.barcode_file.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0995EOAF/",
"accession": "IGVFFI0995EOAF",
"aliases": [
"buenrostro-bernstein:SS-LS_8436_barcode"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-26T15:02:37.374372+00:00",
"file_format": "fastq",
"file_size": 513762,
"href": "/sequence-files/IGVFFI0995EOAF/@@download/IGVFFI0995EOAF.fastq.gz",
"md5sum": "3935ae1bb83b4b134cda0236f66878c8",
"s3_uri": "s3://igvf-restricted-files/2025/03/26/6521a0d2-1d2f-446b-9acd-62823d09749c/IGVFFI0995EOAF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/69c315c5-fa46-4d72-943a-6a5fc580c36b/call-create_fastq_barcode/shard-7/SS-CoPA-2266_L1_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R2.barcode_file.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3949UCYJ/",
"accession": "IGVFFI3949UCYJ",
"aliases": [
"buenrostro-bernstein:SS-LS_9012_barcode"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-26T15:25:56.809477+00:00",
"file_format": "fastq",
"file_size": 479039,
"href": "/sequence-files/IGVFFI3949UCYJ/@@download/IGVFFI3949UCYJ.fastq.gz",
"md5sum": "181de06efa585e9ffd48626a4a15b55d",
"s3_uri": "s3://igvf-restricted-files/2025/03/26/dce30cb4-acf4-4be4-bbf7-e6e2c65819b7/IGVFFI3949UCYJ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/69c315c5-fa46-4d72-943a-6a5fc580c36b/call-create_fastq_barcode/shard-1/SS-CoPA-2266_L7_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R2.barcode_file.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8390GDDZ/",
"accession": "IGVFFI8390GDDZ",
"aliases": [
"buenrostro-bernstein:SS-LS_9108_barcode"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-26T15:33:05.473341+00:00",
"file_format": "fastq",
"file_size": 461663,
"href": "/sequence-files/IGVFFI8390GDDZ/@@download/IGVFFI8390GDDZ.fastq.gz",
"md5sum": "3c87dfae3dcaf6ac684766398b77c441",
"s3_uri": "s3://igvf-restricted-files/2025/03/26/f735a075-e218-4801-ae3f-0d7ebfa1dbb4/IGVFFI8390GDDZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/69c315c5-fa46-4d72-943a-6a5fc580c36b/call-create_fastq_barcode/shard-0/SS-CoPA-2266_L8_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R2.barcode_file.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7595HEYS/",
"accession": "IGVFFI7595HEYS",
"aliases": [
"buenrostro-bernstein:SS-LS_8916_barcode"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-26T15:22:03.361065+00:00",
"file_format": "fastq",
"file_size": 463447,
"href": "/sequence-files/IGVFFI7595HEYS/@@download/IGVFFI7595HEYS.fastq.gz",
"md5sum": "3b2e2b01ed6e1fc346d3bfa181a59061",
"s3_uri": "s3://igvf-restricted-files/2025/03/26/6bd9fa41-3205-4721-953b-2b57221ff34f/IGVFFI7595HEYS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/69c315c5-fa46-4d72-943a-6a5fc580c36b/call-create_fastq_barcode/shard-2/SS-CoPA-2266_L6_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R2.barcode_file.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0910AIDS/",
"accession": "IGVFFI0910AIDS",
"aliases": [
"buenrostro-bernstein:SS-LS_8820_barcode"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-26T15:18:19.585826+00:00",
"file_format": "fastq",
"file_size": 478113,
"href": "/sequence-files/IGVFFI0910AIDS/@@download/IGVFFI0910AIDS.fastq.gz",
"md5sum": "851b784db925196886b9810bd6312a84",
"s3_uri": "s3://igvf-restricted-files/2025/03/26/7954ea25-7de9-4401-a617-f2db29602a71/IGVFFI0910AIDS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/69c315c5-fa46-4d72-943a-6a5fc580c36b/call-create_fastq_barcode/shard-3/SS-CoPA-2266_L5_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R2.barcode_file.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8144WLKO/",
"accession": "IGVFFI8144WLKO",
"aliases": [
"buenrostro-bernstein:SS-LS_962_barcode"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-25T02:31:01.886036+00:00",
"file_format": "fastq",
"file_size": 30875122,
"href": "/sequence-files/IGVFFI8144WLKO/@@download/IGVFFI8144WLKO.fastq.gz",
"md5sum": "901e5a14d05d8e849915da523729e67a",
"s3_uri": "s3://igvf-restricted-files/2025/03/25/b02e9a5f-1565-42c1-a596-94363ff82a97/IGVFFI8144WLKO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/69c315c5-fa46-4d72-943a-6a5fc580c36b/call-create_fastq_barcode/shard-13/SS-CoPA-933_L2_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R2.barcode_file.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3773GKEP/",
"accession": "IGVFFI3773GKEP",
"aliases": [
"buenrostro-bernstein:SS-LS_8628_R1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-25T15:58:34.769332+00:00",
"file_format": "fastq",
"file_size": 814420,
"href": "/sequence-files/IGVFFI3773GKEP/@@download/IGVFFI3773GKEP.fastq.gz",
"md5sum": "c8c53a62db0b8a33d5f33b500de1ade2",
"s3_uri": "s3://igvf-restricted-files/2025/03/25/56faaa4a-4460-4981-a592-c47789b144e7/IGVFFI3773GKEP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://broad-epi-ss-lane-subsets/SS-CoPA-2266_L3_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5855ENJW/",
"accession": "IGVFFI5855ENJW",
"aliases": [
"buenrostro-bernstein:SS-LS_8532_R1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-25T15:50:44.793430+00:00",
"file_format": "fastq",
"file_size": 813565,
"href": "/sequence-files/IGVFFI5855ENJW/@@download/IGVFFI5855ENJW.fastq.gz",
"md5sum": "27d0f2ee9b47d1c7ebc99b15b492449b",
"s3_uri": "s3://igvf-restricted-files/2025/03/25/1bb0bcda-3c2e-42e9-8e3d-2835e5f8b9d6/IGVFFI5855ENJW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://broad-epi-ss-lane-subsets/SS-CoPA-2266_L2_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1366ZTUG/",
"accession": "IGVFFI1366ZTUG",
"aliases": [
"buenrostro-bernstein:SS-LS_8436_R1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-25T15:43:44.543145+00:00",
"file_format": "fastq",
"file_size": 844806,
"href": "/sequence-files/IGVFFI1366ZTUG/@@download/IGVFFI1366ZTUG.fastq.gz",
"md5sum": "0c5faed0f408e5c304a2300bd9ff8e24",
"s3_uri": "s3://igvf-restricted-files/2025/03/25/c6ec27e8-268e-4e52-a565-efa80cf251c7/IGVFFI1366ZTUG.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://broad-epi-ss-lane-subsets/SS-CoPA-2266_L1_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3507OJWF/",
"accession": "IGVFFI3507OJWF",
"aliases": [
"buenrostro-bernstein:SS-LS_8436_R2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-25T15:43:46.538650+00:00",
"file_format": "fastq",
"file_size": 813289,
"href": "/sequence-files/IGVFFI3507OJWF/@@download/IGVFFI3507OJWF.fastq.gz",
"md5sum": "a8532c74bb63f2db73243b654fda6918",
"s3_uri": "s3://igvf-restricted-files/2025/03/25/e09e612a-9bac-499b-a85c-4b66bb846646/IGVFFI3507OJWF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/69c315c5-fa46-4d72-943a-6a5fc580c36b/call-create_fastq_barcode/shard-7/SS-CoPA-2266_L1_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R2.R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1208FKYI/",
"accession": "IGVFFI1208FKYI",
"aliases": [
"buenrostro-bernstein:SS-LS_8628_R2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-25T15:58:37.222541+00:00",
"file_format": "fastq",
"file_size": 789385,
"href": "/sequence-files/IGVFFI1208FKYI/@@download/IGVFFI1208FKYI.fastq.gz",
"md5sum": "ab9fbee66f5860915ecd4963230636e1",
"s3_uri": "s3://igvf-restricted-files/2025/03/25/5af35cf3-bb2e-4bf3-9bf6-0b061607a5b5/IGVFFI1208FKYI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/69c315c5-fa46-4d72-943a-6a5fc580c36b/call-create_fastq_barcode/shard-5/SS-CoPA-2266_L3_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R2.R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9787EXFE/",
"accession": "IGVFFI9787EXFE",
"aliases": [
"buenrostro-bernstein:SS-LS_8532_R2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-25T15:50:47.101185+00:00",
"file_format": "fastq",
"file_size": 780587,
"href": "/sequence-files/IGVFFI9787EXFE/@@download/IGVFFI9787EXFE.fastq.gz",
"md5sum": "cc91b674e101f07c71e04601e91783c5",
"s3_uri": "s3://igvf-restricted-files/2025/03/25/bf1fab07-5219-4718-b9f8-34374aaacd59/IGVFFI9787EXFE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/69c315c5-fa46-4d72-943a-6a5fc580c36b/call-create_fastq_barcode/shard-6/SS-CoPA-2266_L2_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R2.R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4762DRXQ/",
"accession": "IGVFFI4762DRXQ",
"aliases": [
"buenrostro-bernstein:SS-LS_8724_R2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-25T16:07:15.291626+00:00",
"file_format": "fastq",
"file_size": 763438,
"href": "/sequence-files/IGVFFI4762DRXQ/@@download/IGVFFI4762DRXQ.fastq.gz",
"md5sum": "d72ce3a21999f9d5a2d3786abff4abab",
"s3_uri": "s3://igvf-restricted-files/2025/03/25/44a2c8f8-19ec-4ac2-8134-1a5567d09879/IGVFFI4762DRXQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/69c315c5-fa46-4d72-943a-6a5fc580c36b/call-create_fastq_barcode/shard-4/SS-CoPA-2266_L4_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R2.R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7401KFBT/",
"accession": "IGVFFI7401KFBT",
"aliases": [
"buenrostro-bernstein:SS-LS_8820_R2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-25T16:16:46.795985+00:00",
"file_format": "fastq",
"file_size": 761526,
"href": "/sequence-files/IGVFFI7401KFBT/@@download/IGVFFI7401KFBT.fastq.gz",
"md5sum": "547e3aa2e82c5ba2c220264e7a869bc1",
"s3_uri": "s3://igvf-restricted-files/2025/03/25/37eed39b-6dce-46cc-8b5a-a54511524449/IGVFFI7401KFBT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/69c315c5-fa46-4d72-943a-6a5fc580c36b/call-create_fastq_barcode/shard-3/SS-CoPA-2266_L5_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R2.R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5665ERXX/",
"accession": "IGVFFI5665ERXX",
"aliases": [
"buenrostro-bernstein:SS-LS_8724_R1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-25T16:07:12.784786+00:00",
"file_format": "fastq",
"file_size": 794284,
"href": "/sequence-files/IGVFFI5665ERXX/@@download/IGVFFI5665ERXX.fastq.gz",
"md5sum": "b5f3e3799e34b5d51596445bbc5d6d88",
"s3_uri": "s3://igvf-restricted-files/2025/03/25/b32db8b5-3de9-491e-b56e-16c3347cc495/IGVFFI5665ERXX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://broad-epi-ss-lane-subsets/SS-CoPA-2266_L4_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2286ZQSE/",
"accession": "IGVFFI2286ZQSE",
"aliases": [
"buenrostro-bernstein:SS-LS_8916_R2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-25T16:26:20.969081+00:00",
"file_format": "fastq",
"file_size": 729983,
"href": "/sequence-files/IGVFFI2286ZQSE/@@download/IGVFFI2286ZQSE.fastq.gz",
"md5sum": "2f3b8656e0cee4b4c83f44cfbf6e2a51",
"s3_uri": "s3://igvf-restricted-files/2025/03/25/e3b4b5f9-83af-48e2-a0b5-970f52cd8301/IGVFFI2286ZQSE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/69c315c5-fa46-4d72-943a-6a5fc580c36b/call-create_fastq_barcode/shard-2/SS-CoPA-2266_L6_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R2.R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3699DZCF/",
"accession": "IGVFFI3699DZCF",
"aliases": [
"buenrostro-bernstein:SS-LS_8916_R1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-25T16:26:18.445979+00:00",
"file_format": "fastq",
"file_size": 762267,
"href": "/sequence-files/IGVFFI3699DZCF/@@download/IGVFFI3699DZCF.fastq.gz",
"md5sum": "be09c8d5e86b80e741ed82914ccea858",
"s3_uri": "s3://igvf-restricted-files/2025/03/25/d23751bd-a5c0-42fa-845e-defeeb2a6ce9/IGVFFI3699DZCF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://broad-epi-ss-lane-subsets/SS-CoPA-2266_L6_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6197TFXZ/",
"accession": "IGVFFI6197TFXZ",
"aliases": [
"buenrostro-bernstein:SS-LS_8820_R1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-25T16:16:43.888901+00:00",
"file_format": "fastq",
"file_size": 796128,
"href": "/sequence-files/IGVFFI6197TFXZ/@@download/IGVFFI6197TFXZ.fastq.gz",
"md5sum": "eccbc1ee7ec0658db7bf4779b0ae9b54",
"s3_uri": "s3://igvf-restricted-files/2025/03/25/e0f79bba-62ea-4f56-bd96-4496a582502d/IGVFFI6197TFXZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://broad-epi-ss-lane-subsets/SS-CoPA-2266_L5_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9196MFHB/",
"accession": "IGVFFI9196MFHB",
"aliases": [
"buenrostro-bernstein:SS-LS_9012_R2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-25T16:35:53.763775+00:00",
"file_format": "fastq",
"file_size": 757344,
"href": "/sequence-files/IGVFFI9196MFHB/@@download/IGVFFI9196MFHB.fastq.gz",
"md5sum": "0ba9463c57bad0ede8b4140fabd3c022",
"s3_uri": "s3://igvf-restricted-files/2025/03/25/624a2878-569d-4da8-979c-c3fe62875240/IGVFFI9196MFHB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/69c315c5-fa46-4d72-943a-6a5fc580c36b/call-create_fastq_barcode/shard-1/SS-CoPA-2266_L7_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R2.R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8855ZPEE/",
"accession": "IGVFFI8855ZPEE",
"aliases": [
"buenrostro-bernstein:SS-LS_9012_R1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-25T16:35:50.804214+00:00",
"file_format": "fastq",
"file_size": 793341,
"href": "/sequence-files/IGVFFI8855ZPEE/@@download/IGVFFI8855ZPEE.fastq.gz",
"md5sum": "620062135b0843040ba04d46a07cb5ba",
"s3_uri": "s3://igvf-restricted-files/2025/03/25/4c031be0-92f0-4f24-95b4-ec15d5c1b533/IGVFFI8855ZPEE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://broad-epi-ss-lane-subsets/SS-CoPA-2266_L7_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2216CFQE/",
"accession": "IGVFFI2216CFQE",
"aliases": [
"buenrostro-bernstein:SS-LS_9108_R1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-25T16:45:31.270811+00:00",
"file_format": "fastq",
"file_size": 759151,
"href": "/sequence-files/IGVFFI2216CFQE/@@download/IGVFFI2216CFQE.fastq.gz",
"md5sum": "1a05deb16e432e9088cef7da44a51b82",
"s3_uri": "s3://igvf-restricted-files/2025/03/25/50cc2705-9484-4a78-913b-3b23a64a3dcb/IGVFFI2216CFQE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://broad-epi-ss-lane-subsets/SS-CoPA-2266_L8_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6734SJYE/",
"accession": "IGVFFI6734SJYE",
"aliases": [
"buenrostro-bernstein:SS-LS_9108_R2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-25T16:45:34.224427+00:00",
"file_format": "fastq",
"file_size": 723454,
"href": "/sequence-files/IGVFFI6734SJYE/@@download/IGVFFI6734SJYE.fastq.gz",
"md5sum": "87f518b93172313ecaf06e2187d82179",
"s3_uri": "s3://igvf-restricted-files/2025/03/25/286cf0fe-941d-4625-bf4c-55f2e8657975/IGVFFI6734SJYE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/69c315c5-fa46-4d72-943a-6a5fc580c36b/call-create_fastq_barcode/shard-0/SS-CoPA-2266_L8_SS-PKR-171_2022-APRIL-R1-PLATE2-3rd-THIRD_R2.R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI4761BSTF/",
"accession": "IGVFFI4761BSTF",
"aliases": [
"buenrostro-bernstein:SS-LS_8532_seqspec"
],
"content_type": "seqspec",
"creation_timestamp": "2025-03-28T18:21:02.273310+00:00",
"file_format": "yaml",
"file_size": 1326,
"href": "/configuration-files/IGVFFI4761BSTF/@@download/IGVFFI4761BSTF.yaml.gz",
"md5sum": "2b4cb92ff74e216d71a15c6e9d93682b",
"s3_uri": "s3://igvf-files/2025/03/28/db82863e-272b-4c44-9de5-aa21956c76b9/IGVFFI4761BSTF.yaml.gz",
"status": "released",
"submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI5855ENJW_seqspec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI9012EPQK/",
"accession": "IGVFFI9012EPQK",
"aliases": [
"buenrostro-bernstein:SS-LS_8436_seqspec"
],
"content_type": "seqspec",
"creation_timestamp": "2025-03-28T18:07:37.176518+00:00",
"file_format": "yaml",
"file_size": 1324,
"href": "/configuration-files/IGVFFI9012EPQK/@@download/IGVFFI9012EPQK.yaml.gz",
"md5sum": "99eaef8a09640f6d1a56218b8f283798",
"s3_uri": "s3://igvf-files/2025/03/28/deb9814d-aaef-4bb1-908f-b64c670b3865/IGVFFI9012EPQK.yaml.gz",
"status": "released",
"submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI1366ZTUG_seqspec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI2940XQBL/",
"accession": "IGVFFI2940XQBL",
"aliases": [
"buenrostro-bernstein:SS-LS_8724_seqspec"
],
"content_type": "seqspec",
"creation_timestamp": "2025-03-28T18:47:51.571172+00:00",
"file_format": "yaml",
"file_size": 1323,
"href": "/configuration-files/IGVFFI2940XQBL/@@download/IGVFFI2940XQBL.yaml.gz",
"md5sum": "2abd98a34a47e4fa7529e7d7035378a6",
"s3_uri": "s3://igvf-files/2025/03/28/211ec327-d39d-4000-8f35-5c3648c6b099/IGVFFI2940XQBL.yaml.gz",
"status": "released",
"submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI5665ERXX_seqspec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI0476UQVN/",
"accession": "IGVFFI0476UQVN",
"aliases": [
"buenrostro-bernstein:SS-LS_8628_seqspec"
],
"content_type": "seqspec",
"creation_timestamp": "2025-03-28T18:34:34.247357+00:00",
"file_format": "yaml",
"file_size": 1326,
"href": "/configuration-files/IGVFFI0476UQVN/@@download/IGVFFI0476UQVN.yaml.gz",
"md5sum": "fa3228c44a7b6edd9deb65e649339194",
"s3_uri": "s3://igvf-files/2025/03/28/9f46437f-17de-464d-a616-9e5b3cd6b283/IGVFFI0476UQVN.yaml.gz",
"status": "released",
"submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI3773GKEP_seqspec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI6797ANNI/",
"accession": "IGVFFI6797ANNI",
"aliases": [
"buenrostro-bernstein:SS-LS_9108_seqspec"
],
"content_type": "seqspec",
"creation_timestamp": "2025-03-28T20:03:13.142199+00:00",
"file_format": "yaml",
"file_size": 1322,
"href": "/configuration-files/IGVFFI6797ANNI/@@download/IGVFFI6797ANNI.yaml.gz",
"md5sum": "b07c7269ca6d802675e126162cf74862",
"s3_uri": "s3://igvf-files/2025/03/28/e69727b3-3386-450b-9953-dc7b7f304d4a/IGVFFI6797ANNI.yaml.gz",
"status": "released",
"submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI2216CFQE_seqspec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI5624NGKE/",
"accession": "IGVFFI5624NGKE",
"aliases": [
"buenrostro-bernstein:SS-LS_8916_seqspec"
],
"content_type": "seqspec",
"creation_timestamp": "2025-03-28T19:30:22.362626+00:00",
"file_format": "yaml",
"file_size": 1325,
"href": "/configuration-files/IGVFFI5624NGKE/@@download/IGVFFI5624NGKE.yaml.gz",
"md5sum": "94aa5350dfd84ca99fb8688dc2f66634",
"s3_uri": "s3://igvf-files/2025/03/28/0083f09f-bb20-4c4a-a742-133db788dee9/IGVFFI5624NGKE.yaml.gz",
"status": "released",
"submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI3699DZCF_seqspec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI5009UBFX/",
"accession": "IGVFFI5009UBFX",
"aliases": [
"buenrostro-bernstein:SS-LS_8820_seqspec"
],
"content_type": "seqspec",
"creation_timestamp": "2025-03-28T19:08:39.263693+00:00",
"file_format": "yaml",
"file_size": 1325,
"href": "/configuration-files/IGVFFI5009UBFX/@@download/IGVFFI5009UBFX.yaml.gz",
"md5sum": "79fb23de72dbeb3138aad4158258a640",
"s3_uri": "s3://igvf-files/2025/03/28/2be92a7d-d6a9-4774-b50f-0d7760ed7168/IGVFFI5009UBFX.yaml.gz",
"status": "released",
"submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI6197TFXZ_seqspec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI2266ERAC/",
"accession": "IGVFFI2266ERAC",
"aliases": [
"buenrostro-bernstein:SS-LS_9012_seqspec"
],
"content_type": "seqspec",
"creation_timestamp": "2025-03-28T19:45:56.270813+00:00",
"file_format": "yaml",
"file_size": 1326,
"href": "/configuration-files/IGVFFI2266ERAC/@@download/IGVFFI2266ERAC.yaml.gz",
"md5sum": "86b33f0e360da1cc55e6af6a321c6d25",
"s3_uri": "s3://igvf-files/2025/03/28/f065e330-4fff-4a9f-b32f-8c1166376326/IGVFFI2266ERAC.yaml.gz",
"status": "released",
"submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI8855ZPEE_seqspec.yaml.gz",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS9805GRJT/"
],
"lab": {
"@id": "/labs/jason-buenrostro/",
"title": "Jason Buenrostro, Broad"
},
"multiome_size": 2,
"onlist_files": [
"/tabular-files/IGVFFI5522PXUM/",
"/tabular-files/IGVFFI0400MBIM/"
],
"onlist_method": "product",
"preferred_assay_title": "SHARE-seq",
"protocols": [
"https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw"
],
"related_multiome_datasets": [
{
"@id": "/measurement-sets/IGVFDS1177QLBB/",
"accession": "IGVFDS1177QLBB",
"status": "released"
}
],
"release_timestamp": "2025-04-10T20:59:11.280439+00:00",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM7278VIVW/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7278VIVW",
"aliases": [
"buenrostro-bernstein:BioSam 4736_SS-PKR 171"
],
"cellular_sub_pool": "SS-PKR 171",
"classifications": [
"pooled cell specimen",
"differentiated cell specimen"
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/26d0a66b-5c86-4326-b305-806fb13d2ae5/",
"certificate_identifier": "IP113-01",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/31aa03ce-8ec8-409b-8a6c-c115297c10f4/",
"certificate_identifier": "IP113-02",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/07b1e07f-a66a-4bd5-9c1a-a8632e734789/",
"certificate_identifier": "IP113-03",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/3c3d7aa1-227e-43c8-8c68-2d3ad8e280b9/",
"certificate_identifier": "IP113-04",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/dff99f30-9e29-4410-bdb4-eed4b70432cf/",
"certificate_identifier": "IP113-05",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/10318039-d9e6-4dd0-8d92-4c551493b9fe/",
"certificate_identifier": "IP113-06",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/32e245d0-ae4b-4334-b826-ed5bf00f111f/",
"certificate_identifier": "IP113-07",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/35c8ed2e-cf1b-4cdd-a6ee-e766e7c3d954/",
"certificate_identifier": "IP113-08",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/70134af2-c4fd-43b4-96a6-9133a119a715/",
"certificate_identifier": "IP113-09",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/8a10acc0-7e24-4912-8833-10141ccf9b5f/",
"certificate_identifier": "IP113-10",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/21c46421-0482-4d0d-ad82-99387fc6add6/",
"certificate_identifier": "IP113-11",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/b117b3dd-25d9-4262-a262-630852050446/",
"certificate_identifier": "IP113-12",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/ae438897-696e-4b7a-98a2-e72438a76b31/",
"certificate_identifier": "IP113-13",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/4542d787-ea26-4176-b01c-5c45ca11b802/",
"certificate_identifier": "IP113-14",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/74917306-afc2-447b-88b2-a97e3e758518/",
"certificate_identifier": "IP113-15",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/fc5dc734-179b-45b8-bb32-e4f57a6bf59c/",
"certificate_identifier": "IP113-16",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/cf9e5e74-e4e6-40d4-bf04-c86fafe9d17e/",
"certificate_identifier": "IP113-17",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/ebddd6b0-c53f-4e05-a451-b5167df7cebd/",
"certificate_identifier": "IP113-18",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/109b8309-9842-4caa-80f7-9f3d1be0c8c1/",
"certificate_identifier": "IP113-19",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/d1431ff4-0095-49ba-a179-5fe34043afeb/",
"certificate_identifier": "IP113-20",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004905/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "induced pluripotent stem cell",
"term_name": "induced pluripotent stem cell"
}
],
"status": "released",
"summary": "Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to hepatic oval stem cell for 7 days (cellular sub pool: SS-PKR 171)",
"targeted_sample_term": {
"@id": "/sample-terms/CL_0002196/",
"status": "released",
"term_name": "hepatic oval stem cell"
},
"taxa": "Homo sapiens"
}
],
"schema_version": "26",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-08-20T15:07:49.044911+00:00",
"summary": "single-cell ATAC-seq (SHARE-seq)",
"uuid": "d37c9e0a-1529-4433-b0f4-48fd3f094ed3"
}