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INDEXED
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MeasurementSet
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IGVFDS4445ONRZ
IGVFDS4445ONRZ
released
GRU
Json view
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 208)
Protocols
https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw
Aliases
buenrostro-bernstein:scATAC Lib 602
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
36 items
1
2
3
4
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0466YBCL
fastq
reads
R1
8616
Read 1
IGVFFI9168DVLI
Illumina NovaSeq X
22LMVNLT4
504 MB
Jason Buenrostro, Broad
validated
IGVFFI0511DICA
fastq
reads
R1
8904
Read 1
IGVFFI0624EVKF
Illumina NovaSeq X
22LMVNLT4
510 MB
Jason Buenrostro, Broad
validated
IGVFFI0559YJEL
fastq
reads
I1
3907
Barcode index
IGVFFI8744GTIP
Illumina NovaSeq X
22523KLT3
245 MB
Jason Buenrostro, Broad
validated
IGVFFI0604RIFY
fastq
reads
R1
9096
Read 1
IGVFFI8759KXCI
Illumina NovaSeq X
22LMVNLT4
501 MB
Jason Buenrostro, Broad
validated
IGVFFI0652CFWS
fastq
reads
R1
8808
Read 1
IGVFFI8273YWWU
Illumina NovaSeq X
22LMVNLT4
505 MB
Jason Buenrostro, Broad
validated
IGVFFI0888LCNN
fastq
reads
I1
8712
Barcode index
IGVFFI7068GNUG
Illumina NovaSeq X
22LMVNLT4
303 MB
Jason Buenrostro, Broad
validated
IGVFFI1158WJGP
fastq
reads
R1
8520
Read 1
IGVFFI6713VTGP
Illumina NovaSeq X
22LMVNLT4
526 MB
Jason Buenrostro, Broad
validated
IGVFFI1682LAYM
fastq
reads
R2
8712
Read 2
IGVFFI7068GNUG
Illumina NovaSeq X
22LMVNLT4
498 MB
Jason Buenrostro, Broad
validated
IGVFFI3472LZXG
fastq
reads
I1
4360
Barcode index
IGVFFI1434ELAH
Illumina NovaSeq 6000
H75F7DSX5
528 MB
Jason Buenrostro, Broad
validated
IGVFFI3690LFNP
fastq
reads
I1
3871
Barcode index
IGVFFI4198QMPV
Illumina NovaSeq X
22523KLT3
244 MB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM8598BUOK
InVitroSystem
induced pluripotent stem cell
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 208)
Donors
99 items
1
2
3
4
5
10
Accession
Aliases
Sex
Taxa
IGVFDO0123YZDN
buenrostro-bernstein:Donor 1943
unspecified
Homo sapiens
IGVFDO0211CZWE
buenrostro-bernstein:Donor 1909
unspecified
Homo sapiens
IGVFDO0279GJBF
buenrostro-bernstein:Donor 1937
unspecified
Homo sapiens
IGVFDO0417TJMX
buenrostro-bernstein:Donor 1907
unspecified
Homo sapiens
IGVFDO0436YOXD
buenrostro-bernstein:Donor 1745
unspecified
Homo sapiens
IGVFDO0508COBR
buenrostro-bernstein:Donor 1963
unspecified
Homo sapiens
IGVFDO0948FTCE
buenrostro-bernstein:Donor 1952
unspecified
Homo sapiens
IGVFDO0980QZSD
buenrostro-bernstein:Donor 1946
unspecified
Homo sapiens
IGVFDO1064GZAS
buenrostro-bernstein:Donor 1982
unspecified
Homo sapiens
IGVFDO1255IJEH
buenrostro-bernstein:Donor 1975
unspecified
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS1443GIQX
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:scRNA Lib 245
Jason Buenrostro, Broad