{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS4420JSXO",
"aliases": [
"bradley-bernstein:scATAC Lib 35",
"buenrostro-bernstein:scATAC Lib 35"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002764/",
"status": "released",
"term_name": "single-cell ATAC-seq"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM3503TNKW](/primary-cells/IGVFSM3503TNKW/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM3503TNKW/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS4420JSXO](/measurement-sets/IGVFDS4420JSXO/) has sequence file(s): [IGVFFI0890JVSA](/sequence-files/IGVFFI0890JVSA/), [IGVFFI0268LCOB](/sequence-files/IGVFFI0268LCOB/), [IGVFFI0708NHJS](/sequence-files/IGVFFI0708NHJS/), [IGVFFI8127FMOU](/sequence-files/IGVFFI8127FMOU/), [IGVFFI0798NICL](/sequence-files/IGVFFI0798NICL/), [IGVFFI2330YLVU](/sequence-files/IGVFFI2330YLVU/), [IGVFFI3956KGOS](/sequence-files/IGVFFI3956KGOS/), [IGVFFI2019NRGY](/sequence-files/IGVFFI2019NRGY/), [IGVFFI7357KNBS](/sequence-files/IGVFFI7357KNBS/), [IGVFFI3468LZBT](/sequence-files/IGVFFI3468LZBT/), [IGVFFI3981AYED](/sequence-files/IGVFFI3981AYED/), [IGVFFI9087AKOL](/sequence-files/IGVFFI9087AKOL/), [IGVFFI7771ITZQ](/sequence-files/IGVFFI7771ITZQ/), [IGVFFI9213YTOT](/sequence-files/IGVFFI9213YTOT/), [IGVFFI5211DOFB](/sequence-files/IGVFFI5211DOFB/), [IGVFFI9531ZSFC](/sequence-files/IGVFFI9531ZSFC/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS4420JSXO/"
}
],
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{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS4420JSXO](/measurement-sets/IGVFDS4420JSXO/) has an `assay_term` of single-cell ATAC-seq but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS4420JSXO/"
}
]
},
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"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
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"accession": "IGVFSM3503TNKW",
"aliases": [
"bradley-bernstein:BioSam 4567_SS-PKR 6",
"buenrostro-bernstein:BioSam 4567_SS-PKR 6"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 6), male, Homo sapiens (29 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:41:49.080086+00:00",
"summary": "single-cell ATAC-seq (SHARE-seq)",
"uuid": "16e930c5-74c9-40a1-b2e7-4eca04944311"
}