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IGVFDS4370KUWU

released
File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
  • multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 1 day; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 5 days; ... and 5 more samples
Protocols
Aliases
ansuman-satpathy:snRNA-seq_igvf9_10x2

Sequencing Results (Illumina)

12 items
Read Names
fastq
reads
I2
1
223JHYLT3
3
1.4 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
223JHYLT3
2
1.3 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R1
1
Read 1
223JHYLT3
1
5.3 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
223JHYLT3
1
1.3 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I2
1
223JHYLT3
2
1.3 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
Read 2
223JHYLT3
2
12 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R1
1
Read 1
223JHYLT3
3
5.5 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R1
1
Read 1
223JHYLT3
2
5.5 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
Read 2
223JHYLT3
1
12 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
223JHYLT3
3
1.3 GB
Ansuman Satpathy, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 1 day; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 5 days; ... and 5 more samples

Donors

1 item
Accession
Aliases
Sex
Taxa
  • ansuman-satpathy:singh_bcell_donor_1
male
Homo sapiens

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
  • ansuman-satpathy:igvf9_analysis_set_10x2
Ansuman Satpathy, Stanford

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
  • ansuman-satpathy:snATAC-seq_igvf9_10x2
Ansuman Satpathy, Stanford

Auxiliary Datasets

1 item
Accession
Type
Summary
Files
Aliases
Lab
AuxiliarySet
lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)
  • ansuman-satpathy:multiseq_igvf9_10x2
Ansuman Satpathy, Stanford

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford