IGVFDS4285NUBA

released

GRU

File Set Type

experimental data

Summary

single-cell ATAC-seq (SHARE-seq)

Assay Term

single-cell ATAC-seq

Sample Summaries

Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to hepatic oval stem cell for 4 days (cellular sub pool: SS-PKR 204)

Protocols

https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw

Aliases

buenrostro-bernstein:scATAC Lib 577

Submitter Comment

Does not have corresponding scRNA seq MeasurementSet due to failed QC

Attribution

Jason Buenrostro, Broad

(

HG011986 — Jason Buenrostro

)

Sequencing Results (Illumina)

3 items

Read Names

IGVFFI2146BGMX

fastq

reads

4393

IGVFFI7680SNIT

Illumina NovaSeq X

22JMFMLT3

2.3 GB

Jason Buenrostro, Broad

validated

IGVFFI2210VNKC

fastq

reads

4393

Barcode index

IGVFFI7680SNIT

Illumina NovaSeq X

22JMFMLT3

1.3 GB

Jason Buenrostro, Broad

validated

IGVFFI5127BGBK

fastq

reads

4393

IGVFFI7680SNIT

Illumina NovaSeq X

22JMFMLT3

2.2 GB

Jason Buenrostro, Broad

validated

Samples

1 item

Accession

Type

Sample Terms

Associated Construct Library Sets

Summary

IGVFSM3253LXYL

InVitroSystem

induced pluripotent stem cell

Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to hepatic oval stem cell for 4 days (cellular sub pool: SS-PKR 204)