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IGVFDS4275VNMS

released
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 12 days; Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 14 days; ... and 2 more samples
Protocols
Aliases
chongyuan-luo:ys3g_snATAC
Attribution
Kathrin Plath, UCLA

Sequencing Results (Illumina)

8 items
Read Names
fastq
reads
R1
1
Read 1
3
17 GB
Kathrin Plath, UCLA
validated
fastq
reads
R2
1
Barcode index
3
5.5 GB
Kathrin Plath, UCLA
validated
fastq
reads
I1
1
Read 1
2
2.3 GB
Kathrin Plath, UCLA
validated
fastq
reads
I1
1
Read 1
3
2.2 GB
Kathrin Plath, UCLA
validated
fastq
reads
R1
1
Read 1
2
17 GB
Kathrin Plath, UCLA
validated
fastq
reads
R2
1
Barcode index
2
5.5 GB
Kathrin Plath, UCLA
validated
fastq
reads
R3
1
Read 2
3
18 GB
Kathrin Plath, UCLA
validated
fastq
reads
R3
1
Read 2
2
18 GB
Kathrin Plath, UCLA
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 12 days; Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 14 days; ... and 2 more samples

Donors

4 items
Aliases
  • chongyuan-luo:C37
unspecified
Homo sapiens
  • chongyuan-luo:C38
unspecified
Homo sapiens
  • chongyuan-luo:C29
unspecified
Homo sapiens
  • chongyuan-luo:C39
unspecified
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
  • chongyuan-luo:ys3g_snRNA
Kathrin Plath, UCLA