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IGVFDS4266OXBF
IGVFDS4266OXBF
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File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
multiplexed sample: Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) putamen tissue associated with Parkinson's disease; ... and 6 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP031_G5_ATAC
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
12 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1557XOBU
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
19U7CA4LE
7
11 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3925WDFS
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
19U7CA4LE
8
3.8 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4203KHGP
fastq
reads
I1
1
Illumina NovaSeq X
19U7CA4LE
6
1.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4668FVBR
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
19U7CA4LE
7
12 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4795DYUY
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
19U7CA4LE
7
2.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4939SBIP
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
19U7CA4LE
6
12 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5403WROV
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
19U7CA4LE
6
2.8 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5539PMHV
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
19U7CA4LE
8
1.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5613AFXI
fastq
reads
I1
1
Illumina NovaSeq X
19U7CA4LE
8
510 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI8145WLSC
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
19U7CA4LE
6
11 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM2759HMOI
MultiplexedSample
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
multiple sclerosis
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) putamen tissue associated with Parkinson's disease; ... and 6 more samples
Donors
8 items
Accession
Aliases
Sex
Taxa
IGVFDO5194SXHC
igvf:corces_donor_BANN1747
male
Homo sapiens
IGVFDO5410JIJT
igvf:corces_donor_BANN0919
male
Homo sapiens
IGVFDO6013FYCW
igvf:corces_donor_BANN0912
male
Homo sapiens
IGVFDO7109IWDJ
igvf:corces_donor_BANN2005
male
Homo sapiens
IGVFDO7186XJLL
igvf:corces_donor_BANN1639
male
Homo sapiens
IGVFDO8155MCUV
igvf:corces_donor_BANN0437
female
Homo sapiens
IGVFDO8458OKEW
igvf:corces_donor_BANN1623
male
Homo sapiens
IGVFDO9211DWXZ
igvf:corces_donor_BANN1352
female
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS9077TLNE
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_RP031_G5_RNA
Ryan Corces, Gladstone Institute UCSF