IGVFDS4263YTZD

preview

This object is in preview status. Metadata is subject to change until this object is released.

File Set Type

experimental data

Summary

single-nucleus RNA sequencing assay (10x multiome)

Assay Term

single-nucleus RNA sequencing assay

Sample Summaries

multiplexed sample: Homo sapiens (female, 78 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 53 years) middle temporal gyrus tissue; ... and 10 more samples

Protocols

https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn

Aliases

igvf:corces_measurementSet_X046_G5_RNA

Sequencing Results (Illumina)

4 items

Read Names

IGVFFI1521WAGT

fastq

reads

Illumina NovaSeq 6000

H5VKTDSX7

2.0 GB

Ryan Corces, Gladstone Institute UCSF

validated

IGVFFI2414AHMQ

fastq

reads

Illumina NovaSeq 6000

H5VKTDSX7

15 GB

Ryan Corces, Gladstone Institute UCSF

validated

IGVFFI2655ACRJ

fastq

reads

Illumina NovaSeq 6000

H5VKTDSX7

1.8 GB

Ryan Corces, Gladstone Institute UCSF

validated

IGVFFI5544LFIO

fastq

reads

Illumina NovaSeq 6000

H5VKTDSX7

6.2 GB

Ryan Corces, Gladstone Institute UCSF

validated

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Associated Construct Library Sets

Summary

IGVFSM2300MKEN

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 78 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 53 years) middle temporal gyrus tissue; ... and 10 more samples