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IGVFDS4257XYUS

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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (female, 27.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 48.0 years) peripheral blood mononuclear cell; ... and 17 more samples
Protocols
Aliases
jimmie-ye:XX8-SC1_snATAC

Sequencing Results (Illumina)

20 items
Read Names
fastq
reads
I1
539
1.3 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
536
Read 1
5.6 GB
Jimmie Ye, UCSF
validated
fastq
reads
R3
540
Read 2
8.9 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
539
Read 1
5.6 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
540
Read 1
5.6 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
539
Barcode index
3.1 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
538
Barcode index
3.1 GB
Jimmie Ye, UCSF
validated
fastq
reads
R3
539
Read 2
8.9 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
537
Read 1
5.6 GB
Jimmie Ye, UCSF
validated
fastq
reads
R3
538
Read 2
8.9 GB
Jimmie Ye, UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female, 27.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 48.0 years) peripheral blood mononuclear cell; ... and 17 more samples

Donors

19 items
Aliases
  • jimmie-ye:donor_330
male
Homo sapiens
  • jimmie-ye:donor_353
female
Homo sapiens
  • jimmie-ye:donor_341
female
Homo sapiens
  • jimmie-ye:donor_290
male
Homo sapiens
  • jimmie-ye:donor_103
female
Homo sapiens
  • jimmie-ye:donor_327
male
Homo sapiens
  • jimmie-ye:donor_244
male
Homo sapiens
  • jimmie-ye:donor_266
male
Homo sapiens
  • jimmie-ye:donor_331
male
Homo sapiens
  • jimmie-ye:donor_247
female
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
  • jimmie-ye:XX8-SC1_snRNA
Jimmie Ye, UCSF

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Jimmie Ye, UCSF