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IGVFDS4227BKGR

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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (male, 35.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 24.0 years) peripheral blood mononuclear cell; ... and 17 more samples
Protocols
Aliases
jimmie-ye:XX7-SC1_snATAC
Attribution
Jimmie Ye, UCSF

Sequencing Results (Illumina)

20 items
Read Names
fastq
reads
I1
508
1.4 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
508
Barcode index
3.3 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
505
Read 1
6.2 GB
Jimmie Ye, UCSF
validated
fastq
reads
R3
507
Read 2
9.6 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
506
Barcode index
3.3 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
506
Read 1
6.2 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
505
Barcode index
3.3 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
504
Barcode index
3.3 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
507
Barcode index
3.3 GB
Jimmie Ye, UCSF
validated
fastq
reads
R3
505
Read 2
9.6 GB
Jimmie Ye, UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male, 35.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 24.0 years) peripheral blood mononuclear cell; ... and 17 more samples

Donors

19 items
Aliases
  • jimmie-ye:donor_228
male
Homo sapiens
  • jimmie-ye:donor_212
female
Homo sapiens
  • jimmie-ye:donor_307
male
Homo sapiens
  • jimmie-ye:donor_43
female
Homo sapiens
  • jimmie-ye:donor_313
female
Homo sapiens
  • jimmie-ye:donor_284
female
Homo sapiens
  • jimmie-ye:donor_44
female
Homo sapiens
  • jimmie-ye:donor_299
male
Homo sapiens
  • jimmie-ye:donor_83
male
Homo sapiens
  • jimmie-ye:donor_257
female
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
  • jimmie-ye:XX7-SC1_snRNA
Jimmie Ye, UCSF