{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS4195RKHK",
"aliases": [
"bradley-bernstein:scRNA Lib 23",
"buenrostro-bernstein:scRNA Lib 23"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002631/",
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM3834STHF](/primary-cells/IGVFSM3834STHF/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM3834STHF/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS4195RKHK](/measurement-sets/IGVFDS4195RKHK/) has sequence file(s): [IGVFFI9576AXTY](/sequence-files/IGVFFI9576AXTY/), [IGVFFI1385OPRJ](/sequence-files/IGVFFI1385OPRJ/), [IGVFFI7761TLFF](/sequence-files/IGVFFI7761TLFF/), [IGVFFI8206TYYP](/sequence-files/IGVFFI8206TYYP/), [IGVFFI6400PEKF](/sequence-files/IGVFFI6400PEKF/), [IGVFFI5769MMOP](/sequence-files/IGVFFI5769MMOP/), [IGVFFI3529TRLP](/sequence-files/IGVFFI3529TRLP/), [IGVFFI0280XHWS](/sequence-files/IGVFFI0280XHWS/), [IGVFFI4927KXWX](/sequence-files/IGVFFI4927KXWX/), [IGVFFI6794TJYP](/sequence-files/IGVFFI6794TJYP/), [IGVFFI5394WVJZ](/sequence-files/IGVFFI5394WVJZ/), [IGVFFI8324AOGI](/sequence-files/IGVFFI8324AOGI/), [IGVFFI4250TBNL](/sequence-files/IGVFFI4250TBNL/), [IGVFFI5445VXII](/sequence-files/IGVFFI5445VXII/), [IGVFFI8798MYHG](/sequence-files/IGVFFI8798MYHG/), [IGVFFI9175YZZY](/sequence-files/IGVFFI9175YZZY/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS4195RKHK/"
}
],
"WARNING": [
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS4195RKHK](/measurement-sets/IGVFDS4195RKHK/) has an `assay_term` of single-cell RNA sequencing assay but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS4195RKHK/"
}
]
},
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},
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"Item"
],
"accession": "IGVFSM3834STHF",
"aliases": [
"bradley-bernstein:BioSam 4567_SS-PKR 4",
"buenrostro-bernstein:BioSam 4567_SS-PKR 4"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 4), male, Homo sapiens (29 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:41:40.376299+00:00",
"summary": "single-cell RNA sequencing assay (SHARE-seq)",
"uuid": "d5bcae81-be29-4a2c-ba74-87f5d784f31c"
}