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INDEXED
Home
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MeasurementSet
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IGVFDS4191KCRM
IGVFDS4191KCRM
released
Json view
File Set Type
experimental data
Summary
Parse SPLiT-seq
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
multiplexed sample: Mus musculus NZO/H1LtJ (female, 69 days) gastrocnemius tissue; Mus musculus NZO/H1LtJ (male, 69 days) left hippocampal formation tissue; ... and 190 more samples
Protocols
https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-eq2lyj17rlx9/v1
https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-n2bvj3noplk5/v2
https://www.protocols.io/view/evercode-wt-mega-v2-2-1-8epv5xxrng1b/v1
https://www.protocols.io/view/evercode-single-index-pcr-5jyl82k9rl2w/v1
Aliases
ali-mortazavi:011_67H_illumina
Attribution
Ali Mortazavi, UCI
(
HG012077
—
Ali Mortazavi
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0865ETVT
fastq
reads
R1
1
Read 1
IGVFFI8670KZDL
Illumina NovaSeq 6000
HCGMMDSX7
1
14 GB
Ali Mortazavi, UCI
validated
IGVFFI0989SLSC
fastq
reads
R1
5
Read 1
IGVFFI5378PHPT
Illumina NovaSeq 6000
H7KYTDSX7
1
13 GB
Ali Mortazavi, UCI
validated
IGVFFI1852BMIO
fastq
reads
R1
7
Read 1
IGVFFI1313JFLI
Illumina NovaSeq 6000
H7KYTDSX7
3
13 GB
Ali Mortazavi, UCI
validated
IGVFFI2257RREQ
fastq
reads
R2
3
Read 2
IGVFFI2869HTVL
Illumina NovaSeq 6000
HCGMMDSX7
3
6.6 GB
Ali Mortazavi, UCI
validated
IGVFFI3165FDZR
fastq
reads
R2
4
Read 2
IGVFFI3653EDGW
Illumina NovaSeq 6000
HCGMMDSX7
4
6.5 GB
Ali Mortazavi, UCI
validated
IGVFFI4054XYMA
fastq
reads
R1
3
Read 1
IGVFFI2869HTVL
Illumina NovaSeq 6000
HCGMMDSX7
3
14 GB
Ali Mortazavi, UCI
validated
IGVFFI4668GORF
fastq
reads
R2
2
Read 2
IGVFFI6930JCCF
Illumina NovaSeq 6000
HCGMMDSX7
2
6.6 GB
Ali Mortazavi, UCI
validated
IGVFFI4709MKFP
fastq
reads
R1
6
Read 1
IGVFFI2364EJIU
Illumina NovaSeq 6000
H7KYTDSX7
2
13 GB
Ali Mortazavi, UCI
validated
IGVFFI5622JSXN
fastq
reads
R2
7
Read 2
IGVFFI1313JFLI
Illumina NovaSeq 6000
H7KYTDSX7
3
6.2 GB
Ali Mortazavi, UCI
validated
IGVFFI6740TDEJ
fastq
reads
R1
8
Read 1
IGVFFI3699EVLV
Illumina NovaSeq 6000
H7KYTDSX7
4
13 GB
Ali Mortazavi, UCI
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM0913IELU
MultiplexedSample
gastrocnemius
,
left cerebral cortex
,
left hippocampal formation
,
right cerebral cortex
,
right hippocampal formation
multiplexed sample: Mus musculus NZO/H1LtJ (female, 69 days) gastrocnemius tissue; Mus musculus NZO/H1LtJ (male, 69 days) left hippocampal formation tissue; ... and 190 more samples
Donors
70 items
1
2
3
4
5
6
7
Accession
Aliases
Sex
Taxa
IGVFDO0026YRCR
ali-mortazavi:018_B6J_10F
female
Mus musculus
IGVFDO0430HQIU
ali-mortazavi:041_129S1J_10M
male
Mus musculus
IGVFDO0624KKTV
ali-mortazavi:030_AJ_10F
female
Mus musculus
IGVFDO0681EHNP
ali-mortazavi:052_NZOJ_10F
female
Mus musculus
IGVFDO0696DMIA
ali-mortazavi:057_WSBJ_10M
male
Mus musculus
IGVFDO0751WQHI
ali-mortazavi:080_PWKJ_10F
female
Mus musculus
IGVFDO0813DZTW
ali-mortazavi:069_NODJ_10M
male
Mus musculus
IGVFDO0853BCOL
ali-mortazavi:058_WSBJ_10F
female
Mus musculus
IGVFDO1452VDIT
ali-mortazavi:035_AJ_10M
male
Mus musculus
IGVFDO1477BPVO
ali-mortazavi:088_CASTJ_10F
female
Mus musculus
Assay Details
Sequencing Library Types
mRNA enriched
File Sets Using This Measurement Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS4381ZRDL
AnalysisSet
Parse SPLiT-seq
ali-mortazavi:igvf_011_Subpool_9_total+core
Ali Mortazavi, UCI