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IGVFDS4165XBTP

released
GRU
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
  • Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to endodermal cell for 2 days (cellular sub pool: SS-PKR 178)
Protocols
Aliases
buenrostro-bernstein:scATAC Lib 433
Attribution
Jason Buenrostro, Broad

Sequencing Results (Illumina)

39 items
Read Names
fastq
reads
R1
8557
Read 1
22LMVNLT4
24 MB
Jason Buenrostro, Broad
validated
fastq
reads
R2
4419
Read 2
22JMFMLT3
9.8 GB
Jason Buenrostro, Broad
validated
fastq
reads
R2
927
Read 2
22773CLT3
975 MB
Jason Buenrostro, Broad
validated
fastq
reads
R1
8749
Read 1
22LMVNLT4
24 MB
Jason Buenrostro, Broad
validated
fastq
reads
R2
969
Read 2
22773CLT3
979 MB
Jason Buenrostro, Broad
validated
fastq
reads
R2
8749
Read 2
22LMVNLT4
23 MB
Jason Buenrostro, Broad
validated
fastq
reads
R2
8557
Read 2
22LMVNLT4
23 MB
Jason Buenrostro, Broad
validated
fastq
reads
I1
8749
Barcode index
22LMVNLT4
14 MB
Jason Buenrostro, Broad
validated
fastq
reads
I1
1053
Barcode index
22773CLT3
846 MB
Jason Buenrostro, Broad
validated
fastq
reads
R1
4419
Read 1
22JMFMLT3
11 GB
Jason Buenrostro, Broad
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to endodermal cell for 2 days (cellular sub pool: SS-PKR 178)

Donors

100 items
Aliases
  • buenrostro-bernstein:Donor 1860
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1850
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1816
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1862
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1834
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1876
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1828
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1892
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1745
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1867
unspecified
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
  • buenrostro-bernstein:scRNA Lib 424
Jason Buenrostro, Broad