IGVFDS4158FYXM

1{
2    "@context": "/terms/",
3    "@id": "/measurement-sets/IGVFDS4158FYXM/",
4    "@type": [
5        "MeasurementSet",
6        "FileSet",
7        "Item"
8    ],
9    "accession": "IGVFDS4158FYXM",
10    "aliases": [
11        "ansuman-satpathy:snATAC-seq_igvf16_10x1"
12    ],
13    "assay_term": {
14        "@id": "/assay-terms/OBI_0002762/",
15        "assay_slims": [
16            "chromatin accessibility"
17        ],
18        "status": "released",
19        "term_name": "single-nucleus ATAC-seq"
20    },
21    "audit": {
22        "INTERNAL_ACTION": [
23            {
24                "category": "mismatched status",
25                "detail": "Released multiplexed sample [IGVFSM3549KFGD](/multiplexed-samples/IGVFSM3549KFGD/) has in progress subobject tabular file [IGVFFI2383CFVI](/tabular-files/IGVFFI2383CFVI/).",
26                "level": 30,
27                "level_name": "INTERNAL_ACTION",
28                "name": "audit_item_status",
29                "path": "/multiplexed-samples/IGVFSM3549KFGD/"
30            },
31            {
32                "category": "mismatched status",
33                "detail": "Released auxiliary set [IGVFDS2071POUF](/auxiliary-sets/IGVFDS2071POUF/) has in progress subobject tabular file [IGVFFI2383CFVI](/tabular-files/IGVFFI2383CFVI/).",
34                "level": 30,
35                "level_name": "INTERNAL_ACTION",
36                "name": "audit_item_status",
37                "path": "/auxiliary-sets/IGVFDS2071POUF/"
38            }
39        ]
40    },
41    "auxiliary_sets": [
42        {
43            "@id": "/auxiliary-sets/IGVFDS2071POUF/",
44            "accession": "IGVFDS2071POUF",
45            "aliases": [
46                "ansuman-satpathy:multiseq_igvf16_10x1"
47            ],
48            "file_set_type": "lipid-conjugated oligo sequencing",
49            "status": "released"
50        }
51    ],
52    "award": {
53        "@id": "/awards/HG012076/",
54        "component": "mapping",
55        "contact_pi": {
56            "@id": "/users/eae4c275-1e07-45e4-ae67-3e437a8680bb/",
57            "title": "Ansuman Satpathy"
58        },
59        "title": "Single-cell Mapping Center for Human Regulatory Elements and Gene Activity"
60    },
61    "control_for": [],
62    "controlled_access": true,
63    "creation_timestamp": "2025-02-03T21:18:25.131966+00:00",
64    "data_use_limitation_summaries": [
65        "GRU"
66    ],
67    "donors": [
68        {
69            "@id": "/human-donors/IGVFDO6169GISQ/",
70            "accession": "IGVFDO6169GISQ",
71            "aliases": [
72                "ansuman-satpathy:donor_of_B009",
73                "igvf:donor_B009"
74            ],
75            "sex": "male",
76            "status": "released",
77            "taxa": "Homo sapiens"
78        },
79        {
80            "@id": "/human-donors/IGVFDO0183MFIP/",
81            "accession": "IGVFDO0183MFIP",
82            "aliases": [
83                "ansuman-satpathy:donor_of_KOLF2.2J",
84                "igvf:donor_KOLF2.2J"
85            ],
86            "sex": "male",
87            "status": "released",
88            "taxa": "Homo sapiens"
89        },
90        {
91            "@id": "/human-donors/IGVFDO8129FWUV/",
92            "accession": "IGVFDO8129FWUV",
93            "aliases": [
94                "ansuman-satpathy:donor_of_B011",
95                "igvf:donor_B011"
96            ],
97            "sex": "female",
98            "status": "released",
99            "taxa": "Homo sapiens"
100        },
101        {
102            "@id": "/human-donors/IGVFDO9716HDYX/",
103            "accession": "IGVFDO9716HDYX",
104            "aliases": [
105                "ansuman-satpathy:donor_of_A002",
106                "igvf:donor_A002"
107            ],
108            "sex": "male",
109            "status": "released",
110            "taxa": "Homo sapiens"
111        },
112        {
113            "@id": "/human-donors/IGVFDO4532PFAJ/",
114            "accession": "IGVFDO4532PFAJ",
115            "aliases": [
116                "ansuman-satpathy:donor_of_A010",
117                "igvf:donor_A010"
118            ],
119            "sex": "female",
120            "status": "released",
121            "taxa": "Homo sapiens"
122        },
123        {
124            "@id": "/human-donors/IGVFDO7650ICPB/",
125            "accession": "IGVFDO7650ICPB",
126            "aliases": [
127                "ansuman-satpathy:donor_of_B001",
128                "igvf:donor_B001"
129            ],
130            "sex": "male",
131            "status": "released",
132            "taxa": "Homo sapiens"
133        },
134        {
135            "@id": "/human-donors/IGVFDO1364EAZP/",
136            "accession": "IGVFDO1364EAZP",
137            "aliases": [
138                "ansuman-satpathy:donor_of_PENN086i-278-1",
139                "igvf:donor_PENN086i-278-1"
140            ],
141            "sex": "male",
142            "status": "released",
143            "taxa": "Homo sapiens"
144        },
145        {
146            "@id": "/human-donors/IGVFDO2620HPCX/",
147            "accession": "IGVFDO2620HPCX",
148            "aliases": [
149                "ansuman-satpathy:donor_of_B003",
150                "igvf:donor_B003"
151            ],
152            "sex": "female",
153            "status": "released",
154            "taxa": "Homo sapiens"
155        },
156        {
157            "@id": "/human-donors/IGVFDO5729MXSO/",
158            "accession": "IGVFDO5729MXSO",
159            "aliases": [
160                "ansuman-satpathy:donor_of_B008",
161                "igvf:donor_B008"
162            ],
163            "sex": "female",
164            "status": "released",
165            "taxa": "Homo sapiens"
166        },
167        {
168            "@id": "/human-donors/IGVFDO7813GMND/",
169            "accession": "IGVFDO7813GMND",
170            "aliases": [
171                "ansuman-satpathy:donor_of_A001",
172                "igvf:donor_A001"
173            ],
174            "sex": "female",
175            "status": "released",
176            "taxa": "Homo sapiens"
177        },
178        {
179            "@id": "/human-donors/IGVFDO3755LIBB/",
180            "accession": "IGVFDO3755LIBB",
181            "aliases": [
182                "ansuman-satpathy:donor_of_A006",
183                "igvf:donor_A006"
184            ],
185            "sex": "male",
186            "status": "released",
187            "taxa": "Homo sapiens"
188        },
189        {
190            "@id": "/human-donors/IGVFDO0720ONIQ/",
191            "accession": "IGVFDO0720ONIQ",
192            "aliases": [
193                "ansuman-satpathy:donor_of_C004",
194                "igvf:donor_C004"
195            ],
196            "sex": "female",
197            "status": "released",
198            "taxa": "Homo sapiens"
199        },
200        {
201            "@id": "/human-donors/IGVFDO9617JBWJ/",
202            "accession": "IGVFDO9617JBWJ",
203            "aliases": [
204                "ansuman-satpathy:donor_of_B002",
205                "igvf:donor_B002"
206            ],
207            "sex": "female",
208            "status": "released",
209            "taxa": "Homo sapiens"
210        },
211        {
212            "@id": "/human-donors/IGVFDO4876ENMD/",
213            "accession": "IGVFDO4876ENMD",
214            "aliases": [
215                "ansuman-satpathy:donor_of_C007",
216                "igvf:donor_C007"
217            ],
218            "sex": "female",
219            "status": "released",
220            "taxa": "Homo sapiens"
221        },
222        {
223            "@id": "/human-donors/IGVFDO4134ZWBU/",
224            "accession": "IGVFDO4134ZWBU",
225            "aliases": [
226                "ansuman-satpathy:donor_of_B005",
227                "igvf:donor_B005"
228            ],
229            "sex": "male",
230            "status": "released",
231            "taxa": "Homo sapiens"
232        },
233        {
234            "@id": "/human-donors/IGVFDO8893DMFF/",
235            "accession": "IGVFDO8893DMFF",
236            "aliases": [
237                "ansuman-satpathy:donor_of_B006",
238                "igvf:donor_B006"
239            ],
240            "sex": "male",
241            "status": "released",
242            "taxa": "Homo sapiens"
243        },
244        {
245            "@id": "/human-donors/IGVFDO9904ZSML/",
246            "accession": "IGVFDO9904ZSML",
247            "aliases": [
248                "ansuman-satpathy:donor_of_RUES1",
249                "igvf:donor_RUES1"
250            ],
251            "sex": "male",
252            "status": "released",
253            "taxa": "Homo sapiens"
254        },
255        {
256            "@id": "/human-donors/IGVFDO7725MEWB/",
257            "accession": "IGVFDO7725MEWB",
258            "aliases": [
259                "ansuman-satpathy:donor_of_GM00731",
260                "igvf:donor_GM00731"
261            ],
262            "sex": "male",
263            "status": "released",
264            "taxa": "Homo sapiens"
265        },
266        {
267            "@id": "/human-donors/IGVFDO2650AGWB/",
268            "accession": "IGVFDO2650AGWB",
269            "aliases": [
270                "ansuman-satpathy:donor_of_WA14",
271                "igvf:donor_WA14"
272            ],
273            "sex": "male",
274            "status": "released",
275            "taxa": "Homo sapiens"
276        },
277        {
278            "@id": "/human-donors/IGVFDO8977PNMK/",
279            "accession": "IGVFDO8977PNMK",
280            "aliases": [
281                "ansuman-satpathy:donor_of_C001",
282                "igvf:donor_C001"
283            ],
284            "sex": "female",
285            "status": "released",
286            "taxa": "Homo sapiens"
287        },
288        {
289            "@id": "/human-donors/IGVFDO5261UCLF/",
290            "accession": "IGVFDO5261UCLF",
291            "aliases": [
292                "igvf:donor_of_RUES2",
293                "igvf:donor_RUES2"
294            ],
295            "sex": "female",
296            "status": "released",
297            "taxa": "Homo sapiens"
298        },
299        {
300            "@id": "/human-donors/IGVFDO2750DZPB/",
301            "accession": "IGVFDO2750DZPB",
302            "aliases": [
303                "ansuman-satpathy:donor_of_B007",
304                "igvf:donor_B007"
305            ],
306            "sex": "male",
307            "status": "released",
308            "taxa": "Homo sapiens"
309        },
310        {
311            "@id": "/human-donors/IGVFDO8129UUAA/",
312            "accession": "IGVFDO8129UUAA",
313            "aliases": [
314                "ansuman-satpathy:donor_of_C008",
315                "igvf:donor_C008"
316            ],
317            "sex": "female",
318            "status": "released",
319            "taxa": "Homo sapiens"
320        },
321        {
322            "@id": "/human-donors/IGVFDO6162MIWK/",
323            "accession": "IGVFDO6162MIWK",
324            "aliases": [
325                "ansuman-satpathy:donor_of_WA26",
326                "igvf:donor_WA26"
327            ],
328            "sex": "female",
329            "status": "released",
330            "taxa": "Homo sapiens"
331        },
332        {
333            "@id": "/human-donors/IGVFDO5614PTYQ/",
334            "accession": "IGVFDO5614PTYQ",
335            "aliases": [
336                "ansuman-satpathy:donor_of_A004",
337                "igvf:donor_A004"
338            ],
339            "sex": "male",
340            "status": "released",
341            "taxa": "Homo sapiens"
342        },
343        {
344            "@id": "/human-donors/IGVFDO7670TOWV/",
345            "accession": "IGVFDO7670TOWV",
346            "aliases": [
347                "ansuman-satpathy:donor_of_B012",
348                "igvf:donor_B012"
349            ],
350            "sex": "female",
351            "status": "released",
352            "taxa": "Homo sapiens"
353        },
354        {
355            "@id": "/human-donors/IGVFDO2379DTAU/",
356            "accession": "IGVFDO2379DTAU",
357            "aliases": [
358                "ansuman-satpathy:donor_of_A007",
359                "igvf:donor_A007"
360            ],
361            "sex": "female",
362            "status": "released",
363            "taxa": "Homo sapiens"
364        },
365        {
366            "@id": "/human-donors/IGVFDO2817PSCX/",
367            "accession": "IGVFDO2817PSCX",
368            "aliases": [
369                "ansuman-satpathy:donor_of_A009",
370                "igvf:donor_A009"
371            ],
372            "sex": "female",
373            "status": "released",
374            "taxa": "Homo sapiens"
375        },
376        {
377            "@id": "/human-donors/IGVFDO2965ZTUG/",
378            "accession": "IGVFDO2965ZTUG",
379            "aliases": [
380                "ansuman-satpathy:donor_of_GM01680",
381                "igvf:donor_GM01680"
382            ],
383            "sex": "female",
384            "status": "released",
385            "taxa": "Homo sapiens"
386        },
387        {
388            "@id": "/human-donors/IGVFDO1964RNHE/",
389            "accession": "IGVFDO1964RNHE",
390            "aliases": [
391                "ansuman-satpathy:donor_of_C003",
392                "igvf:donor_C003"
393            ],
394            "sex": "male",
395            "status": "released",
396            "taxa": "Homo sapiens"
397        },
398        {
399            "@id": "/human-donors/IGVFDO4452ZQSF/",
400            "accession": "IGVFDO4452ZQSF",
401            "aliases": [
402                "ansuman-satpathy:donor_of_B010",
403                "igvf:donor_B010"
404            ],
405            "sex": "male",
406            "status": "released",
407            "taxa": "Homo sapiens"
408        },
409        {
410            "@id": "/human-donors/IGVFDO6638HIAD/",
411            "accession": "IGVFDO6638HIAD",
412            "aliases": [
413                "igvf:donor_of_H1"
414            ],
415            "sex": "male",
416            "status": "released",
417            "taxa": "Homo sapiens"
418        },
419        {
420            "@id": "/human-donors/IGVFDO0657EMJH/",
421            "accession": "IGVFDO0657EMJH",
422            "aliases": [
423                "ansuman-satpathy:donor_of_GM01652",
424                "igvf:donor_GM01652"
425            ],
426            "sex": "female",
427            "status": "released",
428            "taxa": "Homo sapiens"
429        },
430        {
431            "@id": "/human-donors/IGVFDO2492CCQG/",
432            "accession": "IGVFDO2492CCQG",
433            "aliases": [
434                "ansuman-satpathy:donor_of_B004",
435                "igvf:donor_B004"
436            ],
437            "sex": "female",
438            "status": "released",
439            "taxa": "Homo sapiens"
440        },
441        {
442            "@id": "/human-donors/IGVFDO6441FSJH/",
443            "accession": "IGVFDO6441FSJH",
444            "aliases": [
445                "ansuman-satpathy:donor_of_A003",
446                "igvf:donor_A003"
447            ],
448            "sex": "female",
449            "status": "released",
450            "taxa": "Homo sapiens"
451        },
452        {
453            "@id": "/human-donors/IGVFDO5656YCPC/",
454            "accession": "IGVFDO5656YCPC",
455            "aliases": [
456                "ansuman-satpathy:donor_of_Mel-1",
457                "igvf:donor_Mel-1"
458            ],
459            "sex": "male",
460            "status": "released",
461            "taxa": "Homo sapiens"
462        },
463        {
464            "@id": "/human-donors/IGVFDO1221XJAX/",
465            "accession": "IGVFDO1221XJAX",
466            "aliases": [
467                "ansuman-satpathy:donor_of_WA13",
468                "igvf:donor_WA13"
469            ],
470            "sex": "male",
471            "status": "released",
472            "taxa": "Homo sapiens"
473        },
474        {
475            "@id": "/human-donors/IGVFDO7140TLQJ/",
476            "accession": "IGVFDO7140TLQJ",
477            "aliases": [
478                "ansuman-satpathy:donor_of_Hues9",
479                "igvf:donor_Hues9"
480            ],
481            "sex": "female",
482            "status": "released",
483            "taxa": "Homo sapiens"
484        },
485        {
486            "@id": "/human-donors/IGVFDO2718IDDQ/",
487            "accession": "IGVFDO2718IDDQ",
488            "aliases": [
489                "igvf:donor_of_H9"
490            ],
491            "sex": "female",
492            "status": "released",
493            "taxa": "Homo sapiens"
494        },
495        {
496            "@id": "/human-donors/IGVFDO8315PGTI/",
497            "accession": "IGVFDO8315PGTI",
498            "aliases": [
499                "igvf:donor_HUES8"
500            ],
501            "sex": "male",
502            "status": "released",
503            "taxa": "Homo sapiens"
504        },
505        {
506            "@id": "/human-donors/IGVFDO7470LCGC/",
507            "accession": "IGVFDO7470LCGC",
508            "aliases": [
509                "ansuman-satpathy:donor_of_WA25",
510                "igvf:donor_WA25"
511            ],
512            "sex": "female",
513            "status": "released",
514            "taxa": "Homo sapiens"
515        },
516        {
517            "@id": "/human-donors/IGVFDO0324ZSAY/",
518            "accession": "IGVFDO0324ZSAY",
519            "aliases": [
520                "ansuman-satpathy:donor_of_PENN020i-588-6",
521                "igvf:donor_PENN0201-588-6"
522            ],
523            "sex": "female",
524            "status": "released",
525            "taxa": "Homo sapiens"
526        },
527        {
528            "@id": "/human-donors/IGVFDO4001VEAC/",
529            "accession": "IGVFDO4001VEAC",
530            "aliases": [
531                "ansuman-satpathy:donor_of_XM001",
532                "igvf:donor_XM001"
533            ],
534            "sex": "female",
535            "status": "released",
536            "taxa": "Homo sapiens"
537        },
538        {
539            "@id": "/human-donors/IGVFDO1038DAII/",
540            "accession": "IGVFDO1038DAII",
541            "aliases": [
542                "ansuman-satpathy:donor_of_Hues6",
543                "igvf:donor_Hues6"
544            ],
545            "sex": "female",
546            "status": "released",
547            "taxa": "Homo sapiens"
548        }
549    ],
550    "externally_hosted": false,
551    "file_set_type": "experimental data",
552    "files": [
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554            "@id": "/sequence-files/IGVFFI3438WUNG/",
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556            "aliases": [
557                "ansuman-satpathy:igvf_exp16_atac_10x1_NGS3_r2"
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579                "ansuman-satpathy:igvf_exp16_atac_10x1_NGS1_r1"
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595            "upload_status": "validated"
596        },
597        {
598            "@id": "/sequence-files/IGVFFI2790FOZF/",
599            "accession": "IGVFFI2790FOZF",
600            "aliases": [
601                "ansuman-satpathy:igvf_exp16_atac_10x1_NGS1_r2"
602            ],
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610            "sequencing_platform": {
611                "@id": "/platform-terms/EFO_0022840/",
612                "status": "released",
613                "term_name": "Illumina NovaSeq X"
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1036            "summary": "multiplexed sample: Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 11 days; Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 3 days; ... and 6 more samples",
1037            "taxa": "Homo sapiens",
1038            "treatments": []
1039        }
1040    ],
1041    "schema_version": "26",
1042    "status": "released",
1043    "submitted_by": {
1044        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
1045        "title": "Christopher Mcginnis"
1046    },
1047    "submitted_files_timestamp": "2025-02-03T22:08:45.565061+00:00",
1048    "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)",
1049    "uuid": "22ee3c83-aab2-45b2-93dd-130cdb1af39a"
1050}