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IGVFDS4128FOHH

released
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Description
Colitis_recovered_adenoma APC01-A1-7B,APC01-B1-4B; Control_adenoma APC01-A1-11B,APC01-A1-13B,APC01-B1-6B
Assay Term
single-cell ATAC-seq
Sample Summaries
  • Mus musculus C57BL/6J colon tissue
Protocols
Aliases
buenrostro-bernstein:surya-mouse-colon_mm-set26
Attribution
Jason Buenrostro, Broad

Sequencing Results (Illumina)

3 items
Read Names
fastq
reads
R1
1
Read 1
6.7 GB
Jason Buenrostro, Broad
validated
fastq
reads
I1
1
Barcode index
2.5 GB
Jason Buenrostro, Broad
validated
fastq
reads
R2
1
Read 2
6.7 GB
Jason Buenrostro, Broad
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
Tissue
Mus musculus C57BL/6J colon tissue

Donors

5 items
Aliases
  • buenrostro-bernstein:surya-APC01-B1-6B
unspecified
Mus musculus
  • buenrostro-bernstein:surya-APC01-B1-4B
unspecified
Mus musculus
  • buenrostro-bernstein:surya-APC01-A1-7B
unspecified
Mus musculus
  • buenrostro-bernstein:surya-APC01-A1-11B
unspecified
Mus musculus
  • buenrostro-bernstein:surya-APC01-A1-13B
unspecified
Mus musculus

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
SHARE-seq: fragments, sparse gene count matrix
  • buenrostro-bernstein:surya-mouse-colitis-tissue-analysis-set
Jason Buenrostro, Broad

Related Multiome Datasets

4 items
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
  • buenrostro-bernstein:surya-mouse-colon_mm-set29
Jason Buenrostro, Broad
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
  • buenrostro-bernstein:surya-mouse-colon_mm-set28
Jason Buenrostro, Broad
MeasurementSet
single-cell ATAC-seq (SHARE-seq)
  • buenrostro-bernstein:surya-mouse-colon_mm-set25
Jason Buenrostro, Broad
MeasurementSet
single-cell ATAC-seq (SHARE-seq)
  • buenrostro-bernstein:surya-mouse-colon_mm-set27
Jason Buenrostro, Broad