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IGVFDS4076MDBL

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File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
  • multiplexed sample: Homo sapiens (male, 26.0 years) peripheral blood mononuclear cell; Homo sapiens (male, 26.0 years) peripheral blood mononuclear cell; ... and 17 more samples
Protocols
Aliases
jimmie-ye:XX8-SC3_snRNA

Sequencing Results (Illumina)

12 items
Read Names
fastq
reads
I2
558
1.2 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
557
Read 2
8.5 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
557
1.1 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
559
Read 2
8.4 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
559
1.1 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
557
Read 1
6.1 GB
Jimmie Ye, UCSF
validated
fastq
reads
I2
557
1.2 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
558
Read 1
6.1 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
558
Read 2
8.5 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
558
1.1 GB
Jimmie Ye, UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male, 26.0 years) peripheral blood mononuclear cell; Homo sapiens (male, 26.0 years) peripheral blood mononuclear cell; ... and 17 more samples

Donors

19 items
Aliases
  • jimmie-ye:donor_330
male
Homo sapiens
  • jimmie-ye:donor_353
female
Homo sapiens
  • jimmie-ye:donor_341
female
Homo sapiens
  • jimmie-ye:donor_290
male
Homo sapiens
  • jimmie-ye:donor_103
female
Homo sapiens
  • jimmie-ye:donor_327
male
Homo sapiens
  • jimmie-ye:donor_244
male
Homo sapiens
  • jimmie-ye:donor_266
male
Homo sapiens
  • jimmie-ye:donor_331
male
Homo sapiens
  • jimmie-ye:donor_247
female
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
  • jimmie-ye:XX8-SC3_snATAC
Jimmie Ye, UCSF

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Jimmie Ye, UCSF