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INDEXED
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MeasurementSet
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IGVFDS4021UKPE
IGVFDS4021UKPE
released
Json view
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
Mus musculus C57BL/6J (male, 10 weeks) left cerebral cortex tissue
Protocols
https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-atac-se-ewov1nm2kgr2/v1
Aliases
ansuman-satpathy:snATAC-seq_mouse_bridge_769
Attribution
Ansuman Satpathy, Stanford
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
4 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0360VNTD
fastq
reads
R1
1
Read 1
IGVFFI6323NIKH
Illumina NovaSeq X
22VLCLLT3
2
20 GB
Ansuman Satpathy, Stanford
validated
IGVFFI2788FRNF
fastq
reads
R2
1
Barcode index
IGVFFI6323NIKH
Illumina NovaSeq X
22VLCLLT3
2
11 GB
Ansuman Satpathy, Stanford
validated
IGVFFI4843GIXM
fastq
reads
I1
1
IGVFFI6323NIKH
Illumina NovaSeq X
22VLCLLT3
2
4.1 GB
Ansuman Satpathy, Stanford
validated
IGVFFI5699KRFZ
fastq
reads
R3
1
Read 2
IGVFFI6323NIKH
Illumina NovaSeq X
22VLCLLT3
2
20 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM9438GDDL
Tissue
left cerebral cortex
Mus musculus C57BL/6J (male, 10 weeks) left cerebral cortex tissue
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO1345QIHE
ali-mortazavi:769_B6J_10M
male
Mus musculus
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS1449TKWZ
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
ansuman-satpathy:snRNA-seq_mouse_bridge_769
Ansuman Satpathy, Stanford