IGVFDS4012MFKW

preview

This object is in preview status. Metadata is subject to change until this object is released.

File Set Type

experimental data

Summary

single-nucleus ATAC-seq (10x multiome)

Assay Term

single-nucleus ATAC-seq

Sample Summaries

multiplexed sample: Homo sapiens (male, 93 years) substantia nigra tissue; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples

Protocols

https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn

Aliases

igvf:corces_measurementSet_X048_G7_ATAC

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Results (Illumina)

4 items

Read Names

IGVFFI0082VLWY

fastq

reads

Barcode index

Illumina NovaSeq 6000

H7VW3DSX7

3.9 GB

Ryan Corces, Gladstone Institute UCSF

validated

IGVFFI5141EOAC

fastq

reads

Illumina NovaSeq 6000

H7VW3DSX7

6.4 GB

Ryan Corces, Gladstone Institute UCSF

validated

IGVFFI6519GSCH

fastq

reads

Illumina NovaSeq 6000

H7VW3DSX7

6.4 GB

Ryan Corces, Gladstone Institute UCSF

validated

IGVFFI9488TYDF

fastq

reads

Illumina NovaSeq 6000

H7VW3DSX7

1.5 GB

Ryan Corces, Gladstone Institute UCSF

validated

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Associated Construct Library Sets

Summary

IGVFSM2062JXFD

MultiplexedSample

posterior cingulate gyrus, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 93 years) substantia nigra tissue; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples