{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS3991RWMW",
"aliases": [
"bradley-bernstein:scATAC Lib 34",
"buenrostro-bernstein:scATAC Lib 34"
],
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"status": "released",
"term_name": "single-cell ATAC-seq"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM1036KMAA](/primary-cells/IGVFSM1036KMAA/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM1036KMAA/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS3991RWMW](/measurement-sets/IGVFDS3991RWMW/) has sequence file(s): [IGVFFI1829KRZT](/sequence-files/IGVFFI1829KRZT/), [IGVFFI6010OVDC](/sequence-files/IGVFFI6010OVDC/), [IGVFFI4800AQVT](/sequence-files/IGVFFI4800AQVT/), [IGVFFI7926RWLP](/sequence-files/IGVFFI7926RWLP/), [IGVFFI4136UAQB](/sequence-files/IGVFFI4136UAQB/), [IGVFFI2467WVXV](/sequence-files/IGVFFI2467WVXV/), [IGVFFI6665MIXS](/sequence-files/IGVFFI6665MIXS/), [IGVFFI2210RTBC](/sequence-files/IGVFFI2210RTBC/), [IGVFFI3214XWAG](/sequence-files/IGVFFI3214XWAG/), [IGVFFI0046PUSP](/sequence-files/IGVFFI0046PUSP/), [IGVFFI0249BWCY](/sequence-files/IGVFFI0249BWCY/), [IGVFFI0967YCNH](/sequence-files/IGVFFI0967YCNH/), [IGVFFI6583KIFD](/sequence-files/IGVFFI6583KIFD/), [IGVFFI3734EJEW](/sequence-files/IGVFFI3734EJEW/), [IGVFFI9168ZFBU](/sequence-files/IGVFFI9168ZFBU/), [IGVFFI7839EOCQ](/sequence-files/IGVFFI7839EOCQ/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS3991RWMW/"
}
],
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{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS3991RWMW](/measurement-sets/IGVFDS3991RWMW/) has an `assay_term` of single-cell ATAC-seq but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS3991RWMW/"
}
]
},
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},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
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"aliases": [
"bradley-bernstein:BioSam 4566_SS-PKR 6",
"buenrostro-bernstein:BioSam 4566_SS-PKR 6"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 6), male, Homo sapiens (49 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:36:06.759312+00:00",
"summary": "single-cell ATAC-seq (SHARE-seq)",
"uuid": "370b8b97-b56f-4e03-b575-6f25ad101752"
}