{
"@context": "/terms/",
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"MeasurementSet",
"FileSet",
"Item"
],
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"aliases": [
"buenrostro-bernstein:scRNA Lib 608"
],
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"@id": "/assay-terms/OBI_0002631/",
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"gene expression"
],
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
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"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "Measurement set [IGVFDS3977WBMS](/measurement-sets/IGVFDS3977WBMS/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/measurement-sets/IGVFDS3977WBMS/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS3977WBMS](/measurement-sets/IGVFDS3977WBMS/) has in progress subobject tabular file [IGVFFI0400MBIM](/tabular-files/IGVFFI0400MBIM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS3977WBMS/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS3977WBMS](/measurement-sets/IGVFDS3977WBMS/) has in progress subobject tabular file [IGVFFI9034HUWG](/tabular-files/IGVFFI9034HUWG/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS3977WBMS/"
},
{
"category": "missing publication",
"detail": "Tissue [IGVFSM9503WHHQ](/tissues/IGVFSM9503WHHQ/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/tissues/IGVFSM9503WHHQ/"
}
],
"NOT_COMPLIANT": [
{
"category": "missing strand specificity",
"detail": "Measurement set [IGVFDS3977WBMS](/measurement-sets/IGVFDS3977WBMS/) is missing required `strand_specificity`. Single-cell assays are expected to specify strand specificity.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_strand_specificity",
"path": "/measurement-sets/IGVFDS3977WBMS/"
}
],
"WARNING": [
{
"category": "missing age",
"detail": "Tissue [IGVFSM9503WHHQ](/tissues/IGVFSM9503WHHQ/) is missing `upper_bound_age`, `lower_bound_age`, and `age_units`. Tissues, primary cells, and whole organisms are expected to specify a lower bound age, upper bound age, and age units.",
"level": 40,
"level_name": "WARNING",
"name": "audit_biosample_age",
"path": "/tissues/IGVFSM9503WHHQ/"
}
]
},
"award": {
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"contact_pi": {
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"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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],
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}
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{
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{
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}
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{
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],
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