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"detail": "Preview human donor [IGVFDO7606UOXI](/human-donors/IGVFDO7606UOXI/) has in progress subobject phenotypic feature [166bde04-bc62-42b7-9b0e-31775e50d7dd](/phenotypic-features/166bde04-bc62-42b7-9b0e-31775e50d7dd/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7606UOXI/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7606UOXI](/human-donors/IGVFDO7606UOXI/) has in progress subobject phenotypic feature [79174baf-cf63-4144-9cc8-050157e38fc4](/phenotypic-features/79174baf-cf63-4144-9cc8-050157e38fc4/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7606UOXI/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7606UOXI](/human-donors/IGVFDO7606UOXI/) has in progress subobject phenotypic feature [bb1e3012-380e-4519-9238-8839d272804c](/phenotypic-features/bb1e3012-380e-4519-9238-8839d272804c/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7606UOXI/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7606UOXI](/human-donors/IGVFDO7606UOXI/) has in progress subobject phenotypic feature [acfae2e4-6c85-46e0-825e-6fde6ec88f0a](/phenotypic-features/acfae2e4-6c85-46e0-825e-6fde6ec88f0a/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7606UOXI/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7606UOXI](/human-donors/IGVFDO7606UOXI/) has in progress subobject phenotypic feature [f7b2d235-fce3-4250-8abf-9a226d1f190f](/phenotypic-features/f7b2d235-fce3-4250-8abf-9a226d1f190f/).",
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"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7606UOXI/"
}
],
"NOT_COMPLIANT": [
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS3973YHYP](/measurement-sets/IGVFDS3973YHYP/) has sequence file(s): [IGVFFI1995CGGT](/sequence-files/IGVFFI1995CGGT/), [IGVFFI9525PCWK](/sequence-files/IGVFFI9525PCWK/), [IGVFFI7820JUXE](/sequence-files/IGVFFI7820JUXE/), [IGVFFI7182UHSI](/sequence-files/IGVFFI7182UHSI/), [IGVFFI8681EFCO](/sequence-files/IGVFFI8681EFCO/), [IGVFFI9349RXMJ](/sequence-files/IGVFFI9349RXMJ/), [IGVFFI2213JSQF](/sequence-files/IGVFFI2213JSQF/), [IGVFFI8229HBAX](/sequence-files/IGVFFI8229HBAX/) which do not have any `seqspecs`. Sequence files in a file set associated with single cell data are expected to link to a sequence specification file.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS3973YHYP/"
},
{
"category": "missing strand specificity",
"detail": "Measurement set [IGVFDS3973YHYP](/measurement-sets/IGVFDS3973YHYP/) is missing required `strand_specificity`. Single-cell assays are expected to specify strand specificity.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_strand_specificity",
"path": "/measurement-sets/IGVFDS3973YHYP/"
}
],
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{
"category": "missing analysis",
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}
]
},
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},
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},
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},
{
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],
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},
{
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],
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},
{
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],
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],
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},
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},
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],
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{
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{
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],
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}
],
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"lab": {
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},
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],
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],
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{
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}
],
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],
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],
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],
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{
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},
{
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},
{
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},
{
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"status": "released",
"term_name": "Alzheimer disease"
}
],
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}
],
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{
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"OntologyTerm",
"Item"
],
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"summary": "putamen",
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},
{
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"OntologyTerm",
"Item"
],
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"summary": "substantia nigra",
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},
{
"@id": "/sample-terms/UBERON_0002740/",
"@type": [
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"OntologyTerm",
"Item"
],
"status": "preview",
"summary": "posterior cingulate gyrus",
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},
{
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"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "preview",
"summary": "middle temporal gyrus",
"term_name": "middle temporal gyrus"
}
],
"status": "preview",
"summary": "multiplexed sample: Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 70 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease; ... and 8 more samples",
"taxa": "Homo sapiens",
"treatments": []
}
],
"schema_version": "26",
"status": "preview",
"submitted_by": {
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"title": "Ryan Corces"
},
"submitted_files_timestamp": "2025-03-20T23:28:44.885501+00:00",
"summary": "single-nucleus ATAC-seq (10x multiome)",
"uuid": "815cc4a6-4f1f-4feb-a362-6266d450d0c7"
}