{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS3961PPIP",
"aliases": [
"bradley-bernstein:scATAC Lib 39",
"buenrostro-bernstein:scATAC Lib 39"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002764/",
"status": "released",
"term_name": "single-cell ATAC-seq"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS3961PPIP](/measurement-sets/IGVFDS3961PPIP/) has sequence file(s): [IGVFFI7494YAGZ](/sequence-files/IGVFFI7494YAGZ/), [IGVFFI7376OTBS](/sequence-files/IGVFFI7376OTBS/), [IGVFFI4809OLSR](/sequence-files/IGVFFI4809OLSR/), [IGVFFI7700HUSN](/sequence-files/IGVFFI7700HUSN/), [IGVFFI9633MVXW](/sequence-files/IGVFFI9633MVXW/), [IGVFFI2410UMBL](/sequence-files/IGVFFI2410UMBL/), [IGVFFI0625YDXK](/sequence-files/IGVFFI0625YDXK/), [IGVFFI0212JDLW](/sequence-files/IGVFFI0212JDLW/), [IGVFFI3267BSFU](/sequence-files/IGVFFI3267BSFU/), [IGVFFI7132TBKE](/sequence-files/IGVFFI7132TBKE/), [IGVFFI5088WVDP](/sequence-files/IGVFFI5088WVDP/), [IGVFFI9427EWSH](/sequence-files/IGVFFI9427EWSH/), [IGVFFI3991QFSK](/sequence-files/IGVFFI3991QFSK/), [IGVFFI9029PJCJ](/sequence-files/IGVFFI9029PJCJ/), [IGVFFI1024XCUK](/sequence-files/IGVFFI1024XCUK/), [IGVFFI8515YRTV](/sequence-files/IGVFFI8515YRTV/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS3961PPIP/"
},
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM8784VEIE](/primary-cells/IGVFSM8784VEIE/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM8784VEIE/"
}
],
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{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS3961PPIP](/measurement-sets/IGVFDS3961PPIP/) has an `assay_term` of single-cell ATAC-seq but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS3961PPIP/"
}
]
},
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},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 7), male, Homo sapiens (29 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:30:50.492638+00:00",
"summary": "single-cell ATAC-seq (SHARE-seq)",
"uuid": "9e26b29e-7c9b-4305-afcb-919b51b0c1a2"
}