IGVFDS3957EPTF

released
GRU
1{
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10    "aliases": [
11        "buenrostro-bernstein:scATAC Lib 604"
12    ],
13    "assay_term": {
14        "@id": "/assay-terms/OBI_0002764/",
15        "assay_slims": [
16            "chromatin accessibility"
17        ],
18        "status": "released",
19        "term_name": "single-cell ATAC-seq"
20    },
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22        "INTERNAL_ACTION": [
23            {
24                "category": "missing publication",
25                "detail": "Measurement set [IGVFDS3957EPTF](/measurement-sets/IGVFDS3957EPTF/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
26                "level": 30,
27                "level_name": "INTERNAL_ACTION",
28                "name": "audit_file_set_missing_publication",
29                "path": "/measurement-sets/IGVFDS3957EPTF/"
30            },
31            {
32                "category": "mismatched status",
33                "detail": "Released measurement set [IGVFDS3957EPTF](/measurement-sets/IGVFDS3957EPTF/) has in progress subobject tabular file [IGVFFI0400MBIM](/tabular-files/IGVFFI0400MBIM/).",
34                "level": 30,
35                "level_name": "INTERNAL_ACTION",
36                "name": "audit_item_status",
37                "path": "/measurement-sets/IGVFDS3957EPTF/"
38            },
39            {
40                "category": "mismatched status",
41                "detail": "Released measurement set [IGVFDS3957EPTF](/measurement-sets/IGVFDS3957EPTF/) has in progress subobject tabular file [IGVFFI5586QIXE](/tabular-files/IGVFFI5586QIXE/).",
42                "level": 30,
43                "level_name": "INTERNAL_ACTION",
44                "name": "audit_item_status",
45                "path": "/measurement-sets/IGVFDS3957EPTF/"
46            },
47            {
48                "category": "missing publication",
49                "detail": "In vitro system [IGVFSM2495KWSE](/in-vitro-systems/IGVFSM2495KWSE/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
50                "level": 30,
51                "level_name": "INTERNAL_ACTION",
52                "name": "audit_sample_missing_publication",
53                "path": "/in-vitro-systems/IGVFSM2495KWSE/"
54            }
55        ]
56    },
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58        "@id": "/awards/HG011986/",
59        "component": "mapping",
60        "contact_pi": {
61            "@id": "/users/33c6eb70-e143-4f77-9661-4b3905737daa/",
62            "title": "Jason Buenrostro"
63        },
64        "title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
65    },
66    "control_for": [],
67    "controlled_access": true,
68    "creation_timestamp": "2024-08-20T14:59:10.855153+00:00",
69    "data_use_limitation_summaries": [
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71    ],
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78            ],
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83        {
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85            "accession": "IGVFDO4983SZXB",
86            "aliases": [
87                "buenrostro-bernstein:Donor 1988"
88            ],
89            "sex": "unspecified",
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91            "taxa": "Homo sapiens"
92        },
93        {
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95            "accession": "IGVFDO9079MLOT",
96            "aliases": [
97                "buenrostro-bernstein:Donor 1933"
98            ],
99            "sex": "unspecified",
100            "status": "released",
101            "taxa": "Homo sapiens"
102        },
103        {
104            "@id": "/human-donors/IGVFDO4283QEWA/",
105            "accession": "IGVFDO4283QEWA",
106            "aliases": [
107                "buenrostro-bernstein:Donor 1974"
108            ],
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110            "status": "released",
111            "taxa": "Homo sapiens"
112        },
113        {
114            "@id": "/human-donors/IGVFDO6704QEET/",
115            "accession": "IGVFDO6704QEET",
116            "aliases": [
117                "buenrostro-bernstein:Donor 1917"
118            ],
119            "sex": "unspecified",
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121            "taxa": "Homo sapiens"
122        },
123        {
124            "@id": "/human-donors/IGVFDO9561MSAD/",
125            "accession": "IGVFDO9561MSAD",
126            "aliases": [
127                "buenrostro-bernstein:Donor 1976"
128            ],
129            "sex": "unspecified",
130            "status": "released",
131            "taxa": "Homo sapiens"
132        },
133        {
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135            "accession": "IGVFDO4924NHKE",
136            "aliases": [
137                "buenrostro-bernstein:Donor 1970"
138            ],
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141            "taxa": "Homo sapiens"
142        },
143        {
144            "@id": "/human-donors/IGVFDO0279GJBF/",
145            "accession": "IGVFDO0279GJBF",
146            "aliases": [
147                "buenrostro-bernstein:Donor 1937"
148            ],
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151            "taxa": "Homo sapiens"
152        },
153        {
154            "@id": "/human-donors/IGVFDO2217VSIY/",
155            "accession": "IGVFDO2217VSIY",
156            "aliases": [
157                "buenrostro-bernstein:Donor 1955"
158            ],
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160            "status": "released",
161            "taxa": "Homo sapiens"
162        },
163        {
164            "@id": "/human-donors/IGVFDO7506JTFC/",
165            "accession": "IGVFDO7506JTFC",
166            "aliases": [
167                "buenrostro-bernstein:Donor 1931"
168            ],
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170            "status": "released",
171            "taxa": "Homo sapiens"
172        },
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176            "aliases": [
177                "buenrostro-bernstein:Donor 1901"
178            ],
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188            ],
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192        },
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195            "accession": "IGVFDO4041WUVL",
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197                "buenrostro-bernstein:Donor 1921"
198            ],
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200            "status": "released",
201            "taxa": "Homo sapiens"
202        },
203        {
204            "@id": "/human-donors/IGVFDO9770WYQG/",
205            "accession": "IGVFDO9770WYQG",
206            "aliases": [
207                "buenrostro-bernstein:Donor 1966"
208            ],
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210            "status": "released",
211            "taxa": "Homo sapiens"
212        },
213        {
214            "@id": "/human-donors/IGVFDO0980QZSD/",
215            "accession": "IGVFDO0980QZSD",
216            "aliases": [
217                "buenrostro-bernstein:Donor 1946"
218            ],
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220            "status": "released",
221            "taxa": "Homo sapiens"
222        },
223        {
224            "@id": "/human-donors/IGVFDO1533MKVB/",
225            "accession": "IGVFDO1533MKVB",
226            "aliases": [
227                "buenrostro-bernstein:Donor 1739"
228            ],
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231            "taxa": "Homo sapiens"
232        },
233        {
234            "@id": "/human-donors/IGVFDO8195QBTP/",
235            "accession": "IGVFDO8195QBTP",
236            "aliases": [
237                "buenrostro-bernstein:Donor 1958"
238            ],
239            "sex": "unspecified",
240            "status": "released",
241            "taxa": "Homo sapiens"
242        },
243        {
244            "@id": "/human-donors/IGVFDO3560WDAC/",
245            "accession": "IGVFDO3560WDAC",
246            "aliases": [
247                "buenrostro-bernstein:Donor 1940"
248            ],
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250            "status": "released",
251            "taxa": "Homo sapiens"
252        },
253        {
254            "@id": "/human-donors/IGVFDO8271RBMD/",
255            "accession": "IGVFDO8271RBMD",
256            "aliases": [
257                "buenrostro-bernstein:Donor 1936"
258            ],
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260            "status": "released",
261            "taxa": "Homo sapiens"
262        },
263        {
264            "@id": "/human-donors/IGVFDO7991MYZO/",
265            "accession": "IGVFDO7991MYZO",
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267                "buenrostro-bernstein:Donor 1978"
268            ],
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277                "buenrostro-bernstein:Donor 1981"
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287                "buenrostro-bernstein:Donor 1934"
288            ],
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293        {
294            "@id": "/human-donors/IGVFDO1467HGMO/",
295            "accession": "IGVFDO1467HGMO",
296            "aliases": [
297                "buenrostro-bernstein:Donor 1969"
298            ],
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304            "@id": "/human-donors/IGVFDO3006ZNMC/",
305            "accession": "IGVFDO3006ZNMC",
306            "aliases": [
307                "buenrostro-bernstein:Donor 1928"
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313        {
314            "@id": "/human-donors/IGVFDO2588YUMG/",
315            "accession": "IGVFDO2588YUMG",
316            "aliases": [
317                "buenrostro-bernstein:Donor 1905"
318            ],
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320            "status": "released",
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322        },
323        {
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325            "accession": "IGVFDO2674JORG",
326            "aliases": [
327                "buenrostro-bernstein:Donor 1782"
328            ],
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330            "status": "released",
331            "taxa": "Homo sapiens"
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335            "accession": "IGVFDO0436YOXD",
336            "aliases": [
337                "buenrostro-bernstein:Donor 1745"
338            ],
339            "sex": "unspecified",
340            "status": "released",
341            "taxa": "Homo sapiens"
342        },
343        {
344            "@id": "/human-donors/IGVFDO2893BVNI/",
345            "accession": "IGVFDO2893BVNI",
346            "aliases": [
347                "buenrostro-bernstein:Donor 1942"
348            ],
349            "sex": "unspecified",
350            "status": "released",
351            "taxa": "Homo sapiens"
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353        {
354            "@id": "/human-donors/IGVFDO1064GZAS/",
355            "accession": "IGVFDO1064GZAS",
356            "aliases": [
357                "buenrostro-bernstein:Donor 1982"
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363        {
364            "@id": "/human-donors/IGVFDO4761JIBM/",
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367                "buenrostro-bernstein:Donor 1960"
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376            "aliases": [
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383        {
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386            "aliases": [
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435            "accession": "IGVFDO4449DKJZ",
436            "aliases": [
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438            ],
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441            "taxa": "Homo sapiens"
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446            "aliases": [
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448            ],
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476            "aliases": [
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483        {
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493        {
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502        },
503        {
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506            "aliases": [
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511            "taxa": "Homo sapiens"
512        },
513        {
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522        },
523        {
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526            "aliases": [
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531            "taxa": "Homo sapiens"
532        },
533        {
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538            ],
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563        {
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566            "aliases": [
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572        },
573        {
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576            "aliases": [
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581            "taxa": "Homo sapiens"
582        },
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584            "@id": "/human-donors/IGVFDO4923LWHA/",
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595            "accession": "IGVFDO4207CTJX",
596            "aliases": [
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598            ],
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600            "status": "released",
601            "taxa": "Homo sapiens"
602        },
603        {
604            "@id": "/human-donors/IGVFDO5150ROJL/",
605            "accession": "IGVFDO5150ROJL",
606            "aliases": [
607                "buenrostro-bernstein:Donor 1900"
608            ],
609            "sex": "unspecified",
610            "status": "released",
611            "taxa": "Homo sapiens"
612        },
613        {
614            "@id": "/human-donors/IGVFDO1255IJEH/",
615            "accession": "IGVFDO1255IJEH",
616            "aliases": [
617                "buenrostro-bernstein:Donor 1975"
618            ],
619            "sex": "unspecified",
620            "status": "released",
621            "taxa": "Homo sapiens"
622        },
623        {
624            "@id": "/human-donors/IGVFDO6338EGAL/",
625            "accession": "IGVFDO6338EGAL",
626            "aliases": [
627                "buenrostro-bernstein:Donor 1977"
628            ],
629            "sex": "unspecified",
630            "status": "released",
631            "taxa": "Homo sapiens"
632        },
633        {
634            "@id": "/human-donors/IGVFDO2318JQUM/",
635            "accession": "IGVFDO2318JQUM",
636            "aliases": [
637                "buenrostro-bernstein:Donor 1791"
638            ],
639            "sex": "unspecified",
640            "status": "released",
641            "taxa": "Homo sapiens"
642        },
643        {
644            "@id": "/human-donors/IGVFDO2649JQXX/",
645            "accession": "IGVFDO2649JQXX",
646            "aliases": [
647                "buenrostro-bernstein:Donor 1659"
648            ],
649            "sex": "unspecified",
650            "status": "released",
651            "taxa": "Homo sapiens"
652        },
653        {
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1966            "aliases": [
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1983            "aliases": [
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1996        },
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1999            "accession": "IGVFFI0932JBWX",
2000            "aliases": [
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2012            "upload_status": "validated"
2013        },
2014        {
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2016            "accession": "IGVFFI9181SPZX",
2017            "aliases": [
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2029            "upload_status": "validated"
2030        },
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2034            "aliases": [
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2045            "submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI9878XFQE_seqspec.yaml.gz",
2046            "upload_status": "validated"
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2051            "aliases": [
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2068            "aliases": [
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2080            "upload_status": "validated"
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2085            "aliases": [
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2097            "upload_status": "validated"
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2102    ],
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2108    "onlist_files": [
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2110        "/tabular-files/IGVFFI0400MBIM/"
2111    ],
2112    "onlist_method": "product",
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2114    "protocols": [
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2129                "InVitroSystem",
2130                "Biosample",
2131                "Sample",
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2133            ],
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2140                "pooled cell specimen",
2141                "differentiated cell specimen"
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2162                    "data_use_limitation": "GRU",
2163                    "status": "released"
2164                },
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2167                    "certificate_identifier": "IP113-04",
2168                    "controlled_access": true,
2169                    "data_use_limitation": "GRU",
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2171                },
2172                {
2173                    "@id": "/institutional-certificates/dff99f30-9e29-4410-bdb4-eed4b70432cf/",
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2175                    "controlled_access": true,
2176                    "data_use_limitation": "GRU",
2177                    "status": "released"
2178                },
2179                {
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2183                    "data_use_limitation": "GRU",
2184                    "status": "released"
2185                },
2186                {
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2199                },
2200                {
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2204                    "data_use_limitation": "GRU",
2205                    "status": "released"
2206                },
2207                {
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2212                    "status": "released"
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2220                },
2221                {
2222                    "@id": "/institutional-certificates/74917306-afc2-447b-88b2-a97e3e758518/",
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2225                    "data_use_limitation": "GRU",
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2227                },
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2232                    "data_use_limitation": "GRU",
2233                    "status": "released"
2234                },
2235                {
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2237                    "certificate_identifier": "IP113-13",
2238                    "controlled_access": true,
2239                    "data_use_limitation": "GRU",
2240                    "status": "released"
2241                },
2242                {
2243                    "@id": "/institutional-certificates/4542d787-ea26-4176-b01c-5c45ca11b802/",
2244                    "certificate_identifier": "IP113-14",
2245                    "controlled_access": true,
2246                    "data_use_limitation": "GRU",
2247                    "status": "released"
2248                },
2249                {
2250                    "@id": "/institutional-certificates/fc5dc734-179b-45b8-bb32-e4f57a6bf59c/",
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2252                    "controlled_access": true,
2253                    "data_use_limitation": "GRU",
2254                    "status": "released"
2255                },
2256                {
2257                    "@id": "/institutional-certificates/ebddd6b0-c53f-4e05-a451-b5167df7cebd/",
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2260                    "data_use_limitation": "GRU",
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2267                    "data_use_limitation": "GRU",
2268                    "status": "released"
2269                },
2270                {
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2273                    "controlled_access": true,
2274                    "data_use_limitation": "GRU",
2275                    "status": "released"
2276                },
2277                {
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2280                    "controlled_access": true,
2281                    "data_use_limitation": "GRU",
2282                    "status": "released"
2283                }
2284            ],
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2290                        "OntologyTerm",
2291                        "Item"
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2295                    "term_name": "induced pluripotent stem cell"
2296                }
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2300            "targeted_sample_term": {
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2302                "status": "released",
2303                "term_name": "neural progenitor cell"
2304            },
2305            "taxa": "Homo sapiens"
2306        }
2307    ],
2308    "schema_version": "26",
2309    "status": "released",
2310    "submitted_by": {
2311        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
2312        "title": "Siddarth Wekhande"
2313    },
2314    "submitted_files_timestamp": "2024-08-20T15:15:57.845232+00:00",
2315    "summary": "single-cell ATAC-seq (SHARE-seq)",
2316    "uuid": "9fc633f6-707f-4961-ad69-9be9329e7b17"
2317}